Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1516 ATGAGGTCTGGCCCAAAAGGGAGTGAAAGTGGAAAGTCAAGGAGAAAGGTTAGAGAGCCAAAGGAGGAGAACGTCACTCTTGGTCCAACTGTTAGAGACGGTGAACATGTTTTCGGTGTAGCCCATATTTATGCATCATTTAACGACACCTTCATTCACGTGACCGATTTGTCTGGGAGAGAAACACTTGTCCGCATCACGGGTGGAATGAAGGTTAAAGCTGACAGAGACGAGTCTTCCCCTTATGCTGCTATGCTTGCTGCACAGGATGTATCTGCTAGATGCAAGGAACTTGGCATCACTGCTCTTCATATCAAGCTCCGGGCCACTGGTGGAAACAAGACAAAGACGCCCGGTCCTGGTGCTCAGTCTGCTCTCCGTGCCCTTGCTCGTTCTGGAATGAAAATTGGTCGTATAGAGGATGTGACTCCAATTCCTTCCGATAGCACTCGCAGAAAGGGTGGTAGAAGAGGATCGTATCACGATGAGGATTAG 495 0.4889 MRSGPKGSESGKSRRKVREPKEENVTLGPTVRDGEHVFGVAHIYASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGSYHDED 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1516 164 Hamap 30S ribosomal protein S11 [rpsK]. 12 158 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lele15g1516 164 MobiDBLite consensus disorder prediction 145 164 - -
Lele15g1516 164 Coils Coil 163 164 - -
Lele15g1516 164 MobiDBLite consensus disorder prediction 140 164 - -
Lele15g1516 164 Pfam Ribosomal protein S11 39 157 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lele15g1516 164 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 8 158 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lele15g1516 164 MobiDBLite consensus disorder prediction 1 29 - -
Lele15g1516 164 FunFam 40S ribosomal protein S14 12 161 - -
Lele15g1516 164 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 14 156 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lele15g1516 164 ProSitePatterns Ribosomal protein S11 signature. 126 148 IPR018102 -
Lele15g1516 164 SUPERFAMILY Translational machinery components 35 157 - -
Lele15g1516 164 MobiDBLite consensus disorder prediction 7 29 - -
Lele15g1516 164 Gene3D Ribosomal protein S11 12 159 IPR036967 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1516 Lele-ChrLele15 8979628 8982077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1516 13 150 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 89.130 4.55e-91 260