Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1481 ATGCTCAAAGAAGGCAACGGCAATGGCGTCACTAGTAGTAATAGCTGGGCACGTATCTGTGACACGTGCCGCTCTGCTCCCTGCACTGTCTACTGCCGCGCCGACATGGCCTACCTCTGCACCGGTTGCGACGGCCGCATCCACGCCGCCAACCGCGTCGCCTCCCGCCACGAGCGCGTCTTTGTCTGCGAGGCCTGTGAACGTGCCCCCGCTGCGTTTCTCTGCAAAGCCGACGCCGCCTCCCTCTGCTCGGCCTGCGACGCCGACATCCACTCCGCCAACCCCCTCGCCAGCCGTCACCACCGCGTCCCCATTCCCCCCATCTACGGGCCCCCTTCCGCGGGGTCTGCTCCCGACGGGGATGATGGTTTCCTAGCTCACGGAGGCGACGAGGCGGAGGAGCAGGAGGTCGTTGATGAAGAGGATGAAGACGAGGCTGCCTCCTGGTTGTTGCTGAATCCTGTGAAGAACAACAATTCCAACAACCACAATCAGAGCAATGGGTTTTTGTTTGGTTCTGGGGAGGTTGATGATTATTTGGACCTCATGGATTGCAATTCATGTGCTGATAATCAGTTGACTGATCATTACAATCAGCAGCAACACTACGGTGTTCCTCAGAAGAACTATGTCGGTGACAGTGTCGTCCCGGTTCAGCAGCAGCATTTTCAGTTGGGTTTGGACTTCGATTCGTCAAAAGCTTGCAACAGTGCTTTCAACGGTTCAGTTACTCAAAATGTTTCGATTTCGTCAATAGATGTTGGCATTGTACCGGAATCAACTATCAGCGATGGCTCGATTTCGCATTCAAGACCTCCAAAAGGGACAATTGACCTATTCTCTGGGCCTCCAATTCAGATACCTTCGCAGCTGAGTCCGATGGACAGGGAGGCTAGGGTGTTAAGATACAGGGAGAAGAAGAAGACAAGAAAGTTTGAGAAGACCATAAGGTATGCGTCCAGGAAGGCTTATGCAGAGACCAGACCTCGCATCAAAGGTCGATTTGCAAAGAGAACAGAGGTGGAAGCTGAAGTGGACCAGATATTCTCTACTTCTCTAATGACGGAAACTGGATATGGCATTGTTCCTTCTTTCTGA 1098 0.5319 MLKEGNGNGVTSSNSWARICDTCRSAPCTVYCRADMAYLCTGCDGRIHAANRVASRHERVFVCEACERAPAAFLCKADAASLCSACDADIHSANPLASRHHRVPIPPIYGPPSAGSAPDGDDGFLAHGGDEAEEQEVVDEEDEDEAASWLLLNPVKNNNSNNHNQSNGFLFGSGEVDDYLDLMDCNSCADNQLTDHYNQQQHYGVPQKNYVGDSVVPVQQQHFQLGLDFDSSKACNSAFNGSVTQNVSISSIDVGIVPESTISDGSISHSRPPKGTIDLFSGPPIQIPSQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTEVEAEVDQIFSTSLMTETGYGIVPSF 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1481 365 Pfam CCT motif 296 338 IPR010402 GO:0005515
Lele15g1481 365 CDD Bbox1_BBX-like 62 105 - -
Lele15g1481 365 MobiDBLite consensus disorder prediction 107 127 - -
Lele15g1481 365 CDD Bbox1_BBX-like 19 62 - -
Lele15g1481 365 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Lele15g1481 365 SMART bboxneu5 15 62 IPR000315 GO:0008270
Lele15g1481 365 SMART bboxneu5 63 105 IPR000315 GO:0008270
Lele15g1481 365 ProSiteProfiles CCT domain profile. 296 338 IPR010402 GO:0005515
Lele15g1481 365 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Lele15g1481 365 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 353 IPR045281 GO:0009909
Lele15g1481 365 Pfam B-box zinc finger 61 105 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1481 Lele-ChrLele15 8696626 8698330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1481 1 365 C2C2-CO-like Transcription Factor Family AT3G02380 58.730 3.59e-141 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele15g1481 zf-B_box 1.3e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0989 13 21062499 21064408 Lele15g1481 15 8696626 8698330 hybridization
Lele14g0885 14 19434948 19436707 Lele15g1481 15 8696626 8698330 hybridization