Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele15g1463 | ATGGGTTCTGTTTGTTGTTGTTTGAGTGCTGATGAATTTGAAGAATATTTAAATCGAAATAGTTCTGTATATAGGAATTGTGTGTGTCTCAATTGCTTCTTACAGAACTTTTTGAATGTGTATACAGCAATTTTCCGCAGAGGGGATGTGCATTCGCTTCCTTCATCTATACAGGGGGCAGCTTCTATGACTTCTACAGCATCTCTTGATAATTCACTATCTGACATGTACCATTCTCCTCCAAGGCCCTTGCCGTATGATGTAGACCCCAGGCATTTCCGCCCACGTGATTTATTCATTTCAAGACATGACAAAGGTTCAAGTCATTTGAACGAAGAGTCAGAACCTCTAAGAGGTGATTTAGATGGGGATGAAGAATCTTTAAATTCAGGAGGCAAATGTAATGAATCTTCCTGTGAAGATGCATCAAAGGAATACAAATCTAAGTCCTCAGTAAGGCTCTCATCAGCAAAATGTACAACTGGAGCTGGGCTTGCTTATGCATCATCAGAGGAGGAGGATATTTGCCCAACTTGTCTTGAAGAATACACTGAAGAGAACCCAAGGATATTGACTAAGTGCAATCATCATTTTCATCTTAGTTGCATTTACGAATGGATGGAGAGAAGTGAAAACTGTCCAGTTTGTGGGAAGGTGATGGAATTCGATGAAACAACTTAA | 681 | 0.3979 | MGSVCCCLSADEFEEYLNRNSSVYRNCVCLNCFLQNFLNVYTAIFRRGDVHSLPSSIQGAASMTSTASLDNSLSDMYHSPPRPLPYDVDPRHFRPRDLFISRHDKGSSHLNEESEPLRGDLDGDEESLNSGGKCNESSCEDASKEYKSKSSVRLSSAKCTTGAGLAYASSEEEDICPTCLEEYTEENPRILTKCNHHFHLSCIYEWMERSENCPVCGKVMEFDETT | 226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele15g1463 | 226 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 60 | 224 | - | - | |
| Lele15g1463 | 226 | ProSiteProfiles | Zinc finger RING-type profile. | 176 | 216 | IPR001841 | - | |
| Lele15g1463 | 226 | SUPERFAMILY | RING/U-box | 171 | 222 | - | - | |
| Lele15g1463 | 226 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 163 | 226 | IPR013083 | - | |
| Lele15g1463 | 226 | SMART | ring_2 | 176 | 216 | IPR001841 | - | |
| Lele15g1463 | 226 | MobiDBLite | consensus disorder prediction | 104 | 139 | - | - | |
| Lele15g1463 | 226 | FunFam | E3 ubiquitin-protein ligase At3g02290-like | 153 | 223 | - | - | |
| Lele15g1463 | 226 | Pfam | RING-H2 zinc finger domain | 170 | 216 | IPR024766 | GO:0008270 | |
| Lele15g1463 | 226 | MobiDBLite | consensus disorder prediction | 104 | 129 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele15g1463 | Lele-ChrLele15 | 8563810 | 8566249 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele15g1463 | 1 | 224 | C3H Transcription Factor Family | AT5G38895 | 58.222 | 1.26e-94 | 278 |