Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1433 ATGGCATTTATCAACAAGATTGGAAAGCTTCTCAAGCATTCTGCTGTGAAATGCATCGGCTCAGAATTTTCTGCTTCTACTCCATCAATTCTCCAGGCAATCAGATCCATGTCATCTGCAAAACTTTTTATTGGAGGTGTTTCATATAGCACAGATGATATGAGTTTGAGAGAAGCCTTCGGTCGCTATGGAGAGATAATTGATGCAAGGGTAATTATAGATCGTGAGACAGGAAGGTCCAGAGGATTTGGGTTTGTAACTTTTGCATCAAGTGAGGAGGCATCTGCTGCCATTCAGGCAATGGATGGTCAGGATCTTCATGGTCGGAGGATACGGGTAAACCATGCTACAGAGAGGTCACGTCCAGGCTTTGGTGCTGGCGGCTATGGTGGGGGTGGTTATGGTGGTGGTGGTGGTTATGGTGGGGGAGGCTATGGTGGGGGAGGCTATGGTGGGGGCTCCGGTAGAAGTAACTATGGAGGCGATAATAACTATAGGAATCCAAGTTATGGAAGCGGTGGTGATGGTTTTGGGGGCAGTGGAAATTATGGTGTTCCTGATGGTGCTGGTGGCAGCAATTACCAATTCAATCAAAGCTCAGGTGAAGATCTAGGCTTTGAACCAAGTGGCAATTCAAGTATGGGAGATGATGCTGGCCAATTTGGTGGCAACCAAAATGAAGGAACTGGCTTAGACGATGAAGATAATTTGAGAGAGAACAACGATGAAGACAACTTGAGAGAGAGCCGGTAG 753 0.4661 MAFINKIGKLLKHSAVKCIGSEFSASTPSILQAIRSMSSAKLFIGGVSYSTDDMSLREAFGRYGEIIDARVIIDRETGRSRGFGFVTFASSEEASAAIQAMDGQDLHGRRIRVNHATERSRPGFGAGGYGGGGYGGGGGYGGGGYGGGGYGGGSGRSNYGGDNNYRNPSYGSGGDGFGGSGNYGVPDGAGGSNYQFNQSSGEDLGFEPSGNSSMGDDAGQFGGNQNEGTGLDDEDNLRENNDEDNLRESR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1433 250 CDD RRM_HP0827_like 41 116 - -
Lele15g1433 250 MobiDBLite consensus disorder prediction 181 250 - -
Lele15g1433 250 PRINTS Eggshell protein signature 171 189 - -
Lele15g1433 250 PRINTS Eggshell protein signature 120 135 - -
Lele15g1433 250 PRINTS Eggshell protein signature 36 52 - -
Lele15g1433 250 PRINTS Eggshell protein signature 145 155 - -
Lele15g1433 250 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 195 - -
Lele15g1433 250 SUPERFAMILY RNA-binding domain, RBD 26 149 IPR035979 GO:0003676
Lele15g1433 250 MobiDBLite consensus disorder prediction 231 250 - -
Lele15g1433 250 Gene3D - 23 140 IPR012677 -
Lele15g1433 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Lele15g1433 250 SMART rrm1_1 41 114 IPR000504 GO:0003723
Lele15g1433 250 MobiDBLite consensus disorder prediction 191 230 - -
Lele15g1433 250 FunFam Glycine-rich RNA-binding protein 3 mitochondrial 21 138 - -
Lele15g1433 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1433 Lele-ChrLele15 8366571 8368167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1433 37 119 Eukaryotic Initiation Factors Gene Family AT3G16380 38.554 1.80e-11 61.6