Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1426 ATGCCTAACCGGGTCGTCATATACCAATGTCCGGATGCAAAACCCTTAAATGGACAATCCTACCTAAACATTTTTTTTGTACCAAAAAAAACAAAAAAAAAGGATAATCCCGGTCCATATAAAACATTGAAGACGCCATTAAAACCTGGAAAGGAGGGCGCATCGGCGAGAGCTTCATCGTTTGGAGCATTGGAGCAGCTTCTCGTTTGCCCCGGTGATTTAGTCATGGCAACTGCGAGAACCGTGAAGGACGTTTCACCGCATGAGTTCGTCAAGGCTTACTCAGCTCACCTCAAGCGCTCTGGCAAGATGGAGCTTCCTGAGTGGGCGGATTTAGTAAAAACTGCAAGATTTAAAGAACTTGCCCCATATGATCCTGACTGGTATTATGTTAGAGCTGCCTCCATGGCAAGAAAGATATACTTGAGAGGTGGTCTTGGTGCCGGTGCCTTTCAAAGAATTTATGGTGGAAGCCAGAGGAATGGAAGCCGCCCCCCACATTTCTGCAAGAGCAGTGGAGCCATTGCCAGACACATTCTTCAGCAGTTGCAAAACATGAACATTATTGAGCTTGATCCAAAAGGAGGTAGGAAAATCACTTCAAGTGGTCAAAGGGATCTTGACCAAGTTGCTGGCCGAATTGTGGTTGCACCTTGA 657 0.4612 MPNRVVIYQCPDAKPLNGQSYLNIFFVPKKTKKKDNPGPYKTLKTPLKPGKEGASARASSFGALEQLLVCPGDLVMATARTVKDVSPHEFVKAYSAHLKRSGKMELPEWADLVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGAGAFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQNMNIIELDPKGGRKITSSGQRDLDQVAGRIVVAP 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1426 218 PANTHER 40S RIBOSOMAL PROTEIN S19 75 214 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lele15g1426 218 Gene3D - 60 217 IPR036388 -
Lele15g1426 218 SUPERFAMILY "Winged helix" DNA-binding domain 81 216 IPR036390 -
Lele15g1426 218 ProSitePatterns Ribosomal protein S19e signature. 165 184 IPR018277 GO:0003735|GO:0005840|GO:0006412
Lele15g1426 218 MobiDBLite consensus disorder prediction 33 54 - -
Lele15g1426 218 SMART Ribosomal_S19e_2 81 217 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lele15g1426 218 FunFam 40S ribosomal protein S19 77 218 - -
Lele15g1426 218 Pfam Ribosomal protein S19e 81 215 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1426 Lele-ChrLele15 8307318 8309187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1426 76 217 Cytoplasmic Ribosomal Protein Gene Family AT5G61170 83.803 6.45e-91 261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1042 13 21421423 21423009 Lele15g1426 15 8307318 8309187 hybridization
Lele14g0942 14 19830216 19831053 Lele15g1426 15 8307318 8309187 hybridization