LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele15g1408	ATGGGTTGCATTAACTCCAAAAATGCTGTTGCCGGAGATTCACCCATGCGCCCGAAGGTGCGCACCGACAATGGGTCTGCTATTGTGGATCCTCCGTCCAAATCCCGATTGGAGGCGTTAGCTTCTGCCTCTAAAGGGGATAAAAAATCGGAGGATAGCAATCGAGATGAGAAGAAGTTCGGGAAGGATATCTCCAAAGGAAGCGGGAATTTCAGTCTCAAGATGGGGATTTCGCATCGGTTCGTGGAAGCGGAGCTGAATGCGGCTGGATGGCCCTCTTGGCTCACAGCTGCTGCGGGCGAAGCTATTCATGGATGGGTTCCCCTCAGAGCAGATTCTTTTGAGAAATTAGAGAAGATCGGGCAAGGTACGTATAGCAGTGTGTTCCGAGCACGTGAAGTTGAAACTGGGAGGATGTTTGCCCTGAAGAAGGTGCGGTTTGACAATATTCAGCCTGAGAGCGTGAGGTTCATGTCAAGAGAAATTTCAATTCTTCGCAGGCTTGACCATCCAAACATTATGAAATTGGAGGGTGTAATTACATCCCGATTATCAAGTAGTTTATACCTTGTGTTTGAATATATGGAGCATGATCTTGCGGGACTAGTATCTTGTCCTGAAATAACGTTCAGCGATTCACAGGTGAAATGTTACATGAGGCAATTACTGAGTGGACTTGAGCACTGTCACCTACGGGGTATCATGCATCGAGACATTAAAGTATCCAATATACTAGTAAATAATGATGGTATACTCAAGATAGGCGATTTTGGATTGGCGAATATAATTAGCTCAAGTAACAAGCATCCATTAACCAGTCGCGTAGTGACTCTATGGTATCGACCTCCTGAACTCTTGATGGGATCAACCAACTATGGAGTATCGGTGGATCTATGGAGTGTGGGTTGTGTATTTGGGGAACTTTTTCATGGCAAACCTATCCTCAAGGGGAGAACTGAGGTTGAACAATTGCACAAAATTTTTAAGCTTTGCGGTTTACCACCTGATGAATTCTGGAAAAAGTGCAAGCTTCCTCATGCAACAATGTTTAAACCTCAGATGACTTATGAAAGCTCTTTTTCGGAGAGGTTTCCAGATATTCCAGAAACTGCTTTAAACCTAATGAAGACTCTACTATCCATTGATTCCCATGACCGTGGGACTGCCTCTTCTGCTCTGATGTCTGAGTATTTCAGCACCAAGCCGCTTGCTTGTGATCCATCAAGCCTGCCAAAATATCCACCCAACAAAGAAATGGATGCTAAAAATCGGGAAGAGGTTCGCAGGAAAAAGGCTGAAGGTAAAGTGCAAGAGGCTGCGACATCAAAAAAGCAAAGACGACTCCGTAAAGTTTTACAAGAACCAAACAATTTCAGTAACCCAGCTTCAACTGATAAAAAGCAGAACAATTCTCAAAAAGCTGTTGAAGACGATGTTAAATCAAATCCTAACAAGGTAAAAGGAGTAGCTATGCAGGAGGCATCCAAGCCTTCAATGAAAGCAATGTCAGAGACCTCCGAGATCAATGGCGTACCTCATGGCTTTAGTATGTTAGCAGGACCAGTACCAGCCTCAGGTGCTAGTGGCTTTGCATGGGCAAAAAGAAGAAAACCAGAGGTTTCATCCACATTATCAGATGGTTCAAAAAGCAAAATTAGCGCACTGGATCCAACCTTTGCAAAAGGCACATATGATTTAACCAGACATGTGATCGATCTCGCGGAAAAAAAATATAAAGACAATACAAGCCATCAGGCTCACCATGGTCAACCGGAAGATATTGATGCATGTTCAAATTTAGCAACCATTTTTGATCCCACGGAAACACCAGATGGTGTGTTGAAAACTCGGGGCCACAAAAATCTTGGCAATGAAAGCACACGCCCTGCAGCCGGGAAATCAAGGTTAGGAAGATAA	1917	0.4403	MGCINSKNAVAGDSPMRPKVRTDNGSAIVDPPSKSRLEALASASKGDKKSEDSNRDEKKFGKDISKGSGNFSLKMGISHRFVEAELNAAGWPSWLTAAAGEAIHGWVPLRADSFEKLEKIGQGTYSSVFRAREVETGRMFALKKVRFDNIQPESVRFMSREISILRRLDHPNIMKLEGVITSRLSSSLYLVFEYMEHDLAGLVSCPEITFSDSQVKCYMRQLLSGLEHCHLRGIMHRDIKVSNILVNNDGILKIGDFGLANIISSSNKHPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFGELFHGKPILKGRTEVEQLHKIFKLCGLPPDEFWKKCKLPHATMFKPQMTYESSFSERFPDIPETALNLMKTLLSIDSHDRGTASSALMSEYFSTKPLACDPSSLPKYPPNKEMDAKNREEVRRKKAEGKVQEAATSKKQRRLRKVLQEPNNFSNPASTDKKQNNSQKAVEDDVKSNPNKVKGVAMQEASKPSMKAMSETSEINGVPHGFSMLAGPVPASGASGFAWAKRRKPEVSSTLSDGSKSKISALDPTFAKGTYDLTRHVIDLAEKKYKDNTSHQAHHGQPEDIDACSNLATIFDPTETPDGVLKTRGHKNLGNESTRPAAGKSRLGR	638

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele15g1408	638	FunFam	probable serine/threonine-protein kinase At1g54610	101	196	-	-
	Lele15g1408	638	MobiDBLite	consensus disorder prediction	405	484	-	-
	Lele15g1408	638	ProSitePatterns	Protein kinases ATP-binding region signature.	120	143	IPR017441	GO:0005524
	Lele15g1408	638	MobiDBLite	consensus disorder prediction	452	469	-	-
	Lele15g1408	638	MobiDBLite	consensus disorder prediction	417	451	-	-
	Lele15g1408	638	Gene3D	Phosphorylase Kinase; domain 1	101	196	-	-
	Lele15g1408	638	MobiDBLite	consensus disorder prediction	1	63	-	-
	Lele15g1408	638	MobiDBLite	consensus disorder prediction	581	638	-	-
	Lele15g1408	638	Gene3D	Transferase(Phosphotransferase) domain 1	197	438	-	-
	Lele15g1408	638	CDD	STKc_CDK9_like	114	398	-	-
	Lele15g1408	638	ProSiteProfiles	Protein kinase domain profile.	114	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele15g1408	638	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	234	246	IPR008271	GO:0004672\|GO:0006468
	Lele15g1408	638	PANTHER	CELL DIVISION PROTEIN KINASE	112	403	-	-
	Lele15g1408	638	SMART	serkin_6	114	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele15g1408	638	SUPERFAMILY	Protein kinase-like (PK-like)	107	404	IPR011009	-
	Lele15g1408	638	Pfam	Protein kinase domain	114	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele15g1408	638	MobiDBLite	consensus disorder prediction	41	63	-	-
	Lele15g1408	638	FunFam	probable serine/threonine-protein kinase At1g54610	197	437	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele15g1408	Lele-ChrLele15	8181462	8185942	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele15g1408	106	433	Core Cell Cycle Gene Families	AT5G10270	45.481	1.01e-104	325

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Lele15g1408		Pkinase	2.5e-69	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele13g1059	13	21536318	21540778	Lele15g1408	15	8181462	8185942	hybridization
	Lele14g0959	14	19941648	19953287	Lele15g1408	15	8181462	8185942	hybridization