Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1406 ATGGGTTGCAGAGATATTCAGAAGATTAGGGTTTGGTTGGGAACTTTTGATACTGCAGAGGAAGCTGCTCGAGCTTATGATGAGGCTGCTTGTCTCCTTCGTGGTGCCAACACCAGGACCAATTTCTGGCCTTGTTCTTATTCTTCTTCAACCCCTGTTCTTTCCTCTAAGATCACCAATCTCCTCCTTCAAAGGCTCAAAGCGAGGAACAACTCTTGCTTTGATTCTTCTTCTTCTTCCTCTGTTTCTCTTCTCTCTGATCAGCACAATGAAGAAGAAGCTGCGGATTTTTCTATTGACCAGTTGACTGATTTCCTAAACGAACCTGAAGATTACAACAGCGCAGGCAACAATGAGTTTAATATGTTCACTGATCATAGTGCGCAAGTTGATTCCTTTACCAGTAGTCTTGAATCATGTTTGACTGAAACAGATGGGTGCAGAGAAAGAGAAATGGGGTCGGAAAATGACGTCAGAAATATTGCTGAGTGCAATTCAGGTGGGGAAAGAGAGGAAGAAAGTGAAGAAGAAACGACGACGCAGATGGGTGTGAAAGATTTCGAGTTTCTGGAGAAGGTTGCTCCATCATGTTACTATTCACCATTTGAGATGGCTGCAGAGATGGAGGAGCATGTGGCGGAGGCAGAGAGCTACGGGGAAGAGCCTGCAATGCTCAGAGATGCCATCAAGAGGATGAAGTATGAGAGGAAGTTCTCAGCTTCTCTCTATGCATTTAATGGAATACCTGAATGCTTGAAGATGAAGCTAGAATCAGGAAACTCCAAGGCAAGAAGGGTTTCTGATCATTTAGCCAACCTTCAGATGGCCTGTCGCAGCAAGGATTACAAAGAAGACATGGGAGTAATGGAAAGGAAAGAAGAACACCCAGTGAGATTAAACGAGGAGGAGGGCTTTTCATCTTCTACCAGTGTTGGTGGTGAATTGTTGTTTTGGAATTCACTGGATCTTCCTCCCATATGTTTAGTTAACTAA 993 0.4391 MGCRDIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSYSSSTPVLSSKITNLLLQRLKARNNSCFDSSSSSSVSLLSDQHNEEEAADFSIDQLTDFLNEPEDYNSAGNNEFNMFTDHSAQVDSFTSSLESCLTETDGCREREMGSENDVRNIAECNSGGEREEESEEETTTQMGVKDFEFLEKVAPSCYYSPFEMAAEMEEHVAEAESYGEEPAMLRDAIKRMKYERKFSASLYAFNGIPECLKMKLESGNSKARRVSDHLANLQMACRSKDYKEDMGVMERKEEHPVRLNEEEGFSSSTSVGGELLFWNSLDLPPICLVN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1406 330 Pfam AP2 domain 9 35 IPR001471 GO:0003700|GO:0006355
Lele15g1406 330 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 239 - -
Lele15g1406 330 SUPERFAMILY DNA-binding domain 7 43 IPR016177 GO:0003677
Lele15g1406 330 CDD AP2 7 42 IPR001471 GO:0003700|GO:0006355
Lele15g1406 330 Gene3D AP2/ERF domain 3 43 IPR036955 GO:0003700|GO:0006355
Lele15g1406 330 ProSiteProfiles AP2/ERF domain profile. 1 43 IPR001471 GO:0003700|GO:0006355
Lele15g1406 330 SMART rav1_2 2 49 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1406 Lele-ChrLele15 8169079 8170071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1406 7 62 AP2-EREBP Transcription Factor Family AT5G19790 71.429 8.37e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele15g1406 AP2 1.9e-06 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1062 13 21551601 21552413 Lele15g1406 15 8169079 8170071 hybridization
Lele14g0960 14 19954142 19955293 Lele15g1406 15 8169079 8170071 hybridization