Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1380 ATGCATACCAATGCCTATGCCTCTGAGACCAATAGCTACGGATGTGACATCGCACGTGCTCTAACTTCTAAGTCCAGTAACTGCGTTTGGCGATCGAAGACAAGTCAAAACATGCAAAGCTTGAATAGTGAAACAGATCAAGATCAGGCGCCAAGCCCTGGTGCTCAGGAGCAACATGCTGGTCTTTCCATCGCAAAACTTGCAGAGAATTACCCTCCCGGTTTTCTCAGGAAGGTATTGGCAGAGACGATAGGGACATATCTGCTGGTTTTTGTGATAAGTGGGACGGCTGCACTGAGTGCTTCCGATGAGAAGAAAGTAGCAGGAATAGGAGCTGAACTTGCAGCAGGATTCATTGTGATGGTGATGGTCTATGCCATTGGACACATCTCGGGGGCCCACATAAACCCAGCCGTCTCCATAGCTTTCGCGGCTTTGGGCCATTTTCCATGGAAAGAGGTCCCGTTTTACGTGGGAGGTCAAATGACAGGAAGCATTGCAGCGTCTTTTACTCTACGACTGTTATTACACCCTATAAAGAATCTGGGAACAAACTCTCCTTCTGGAACAGATGCTCAAGCTCTAGTCATGGAGATCCTCATCACTTTCATTCTCATGTTCGTTATCTGCGCCGTCACAACTGATTCAAAAGCTGTTGGAGAGCTAGCGGGAGTTGCAATAGGCTTTTCAGTGGGCATAGGAAACATCATTGGAGGACCGATATCGGGGGGATCGTTGAATCCGGCAAGAACATTGGGTCCTGCATTTGCAAGTGGGTCCTATAAAGGAATTTGGGTGTATCTGGTTGGACCAGTTATTGGGGCCGTTTTAGGTGCATGGTCTTACAGTACTATTCAGGAGAATGAAGACAATTCAGCATCCTCCATTAAACTAACTTCATGTCTATCCAAGCTACGCTCCATGAATAAGGAAGCTGAGCAAGTTGGCGTGGAACACGATCGTGCGAACAGAGTTTAA 978 0.4724 MHTNAYASETNSYGCDIARALTSKSSNCVWRSKTSQNMQSLNSETDQDQAPSPGAQEQHAGLSIAKLAENYPPGFLRKVLAETIGTYLLVFVISGTAALSASDEKKVAGIGAELAAGFIVMVMVYAIGHISGAHINPAVSIAFAALGHFPWKEVPFYVGGQMTGSIAASFTLRLLLHPIKNLGTNSPSGTDAQALVMEILITFILMFVICAVTTDSKAVGELAGVAIGFSVGIGNIIGGPISGGSLNPARTLGPAFASGSYKGIWVYLVGPVIGAVLGAWSYSTIQENEDNSASSIKLTSCLSKLRSMNKEAEQVGVEHDRANRV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1380 325 TIGRFAM MIP: MIP family channel proteins 81 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele15g1380 325 PANTHER AQUAPORIN NIP2-1 47 290 IPR034294 -
Lele15g1380 325 Gene3D Glycerol uptake facilitator protein. 32 295 IPR023271 -
Lele15g1380 325 Pfam Major intrinsic protein 75 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele15g1380 325 ProSitePatterns MIP family signature. 134 142 IPR022357 -
Lele15g1380 325 PRINTS Major intrinsic protein family signature 77 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele15g1380 325 PRINTS Major intrinsic protein family signature 228 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele15g1380 325 PRINTS Major intrinsic protein family signature 116 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele15g1380 325 PRINTS Major intrinsic protein family signature 153 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele15g1380 325 PRINTS Major intrinsic protein family signature 197 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele15g1380 325 PRINTS Major intrinsic protein family signature 265 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele15g1380 325 MobiDBLite consensus disorder prediction 37 56 - -
Lele15g1380 325 CDD MIP 77 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele15g1380 325 SUPERFAMILY Aquaporin-like 70 287 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1380 Lele-ChrLele15 8028100 8029573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1380 36 311 Major Intrinsic Protein MIP AT5G37820 41.281 9.09e-69 216