Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1359 ATGTTTCACACCAATCGCTCCCATGAAGATCATCATCAGCAGCAGCAGCACGACCCCCACCTCTCCTCATCTCCGTCTCTCCAATCCTTCCCTCCATTACCACCCCAACACTTTCAAACTCGGAGTGCACCTTTCATGGTGAAGAGATCGATGTCGTTTTCAGGGATAGAGAGCAGGTTCGATATGGATGTGAATGGAGGTGATGATGATTTGTCGGATGATGGTTCGGTGCAGATAGGGGAGAAGAAGAAGAGGCTGAAGATGGAGCAGGTTAAGGCACTCGAGAAGAGCTTTGAGGTTGGGAACAAGCTTGAGCCAGAGAGGAAACTGGAGCTGGCTAAGGCTTTGGGTCTGCAGCCACGTCAGATCGCCATTTGGTTTCAGAACAGGAGAGCCCGATGGAAGGCCAAGAACCTCGAGAAAGAATACGAATCCCTCAAGAAACAGTTCGAAGCTCTCAAGGCCGACAACGACGCTCTTAACCTTCAGAACCAGAAACTTCATGCAGAGTTACAAGCCCTGAAAGGACGAGATCATCACCGTGAAGGAGGAACAGTGAGCCTGGTGAAGAAAGAAACGGAGGGCTCTTGGAGCAATAATGGAAGTGACAACAGCTCAGACATCAACTTGGACCTTTCAAGAACACCAGTTAGAAACAGTCCTGATTGTTCTCAGAACGGTAAAAGCCATCAGCTCGTCCTAGGCTCAAATCCAAAGCCCACCAGCATAACACAACTCCTCCAGTTCTCAACAAGATCAGATCTCCAAGACGAAACCTTCTCCAACATGTTCAACCCCACCTCCAACCCCACCATCGATGATCATCAGCAGCAGAACTTCTGGACCTGGCCTCATGAGCAGCACCATTTTCATTGA 876 0.4943 MFHTNRSHEDHHQQQQHDPHLSSSPSLQSFPPLPPQHFQTRSAPFMVKRSMSFSGIESRFDMDVNGGDDDLSDDGSVQIGEKKKRLKMEQVKALEKSFEVGNKLEPERKLELAKALGLQPRQIAIWFQNRRARWKAKNLEKEYESLKKQFEALKADNDALNLQNQKLHAELQALKGRDHHREGGTVSLVKKETEGSWSNNGSDNSSDINLDLSRTPVRNSPDCSQNGKSHQLVLGSNPKPTSITQLLQFSTRSDLQDETFSNMFNPTSNPTIDDHQQQNFWTWPHEQHHFH 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1359 291 Coils Coil 129 177 - -
Lele15g1359 291 MobiDBLite consensus disorder prediction 191 239 - -
Lele15g1359 291 CDD homeodomain 82 135 IPR001356 GO:0003677
Lele15g1359 291 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Lele15g1359 291 MobiDBLite consensus disorder prediction 1 42 - -
Lele15g1359 291 Pfam Homeodomain 82 135 IPR001356 GO:0003677
Lele15g1359 291 SMART HOX_1 80 141 IPR001356 GO:0003677
Lele15g1359 291 MobiDBLite consensus disorder prediction 174 239 - -
Lele15g1359 291 Gene3D - 76 146 - -
Lele15g1359 291 FunFam Homeobox-leucine zipper protein ATHB-13 73 141 - -
Lele15g1359 291 MobiDBLite consensus disorder prediction 1 17 - -
Lele15g1359 291 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Lele15g1359 291 MobiDBLite consensus disorder prediction 174 188 - -
Lele15g1359 291 Pfam Homeobox associated leucine zipper 137 176 IPR003106 GO:0006355|GO:0043565
Lele15g1359 291 SUPERFAMILY Homeodomain-like 70 138 IPR009057 -
Lele15g1359 291 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677
Lele15g1359 291 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677
Lele15g1359 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 57 259 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1359 Lele-ChrLele15 7882590 7884357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1359 14 284 Homeobox Transcription Factor Family AT5G15150 45.302 5.07e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele15g1359 Homeodomain 1e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1106 13 21846297 21848101 Lele15g1359 15 7882590 7884357 hybridization
Lele14g1001 14 20222070 20223782 Lele15g1359 15 7882590 7884357 hybridization