Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1348 ATGTTGGGGTTGCAGAATCCAGGGCAGATGAAAATATTTTCTGGAGGGATTTTATGGAAAAGACAGGGGGGCGGTAAAGCAATCGAGGTCGATAAGGCTGACATAATGGGAGTGACTTGGATGAAGGTCCCAAGAACTAATCAGCTTGGTGTTCGAATCAAAGATGGATTGTACTACAAGTTCACTGGGTTCCGTGACCAGGATATGCCAAGTTTGACTAGCTTTTTCCAAAATACATGTGGGATTACACCAGAGGAAAAGCATCTTTCTGTTAGTGGGCGTAATTGGGGAGACTTTGATCTAAATGGAAATATGCTGACTTTCATGGTTGGCTCAAAGCAAGCTTTTGAGGTGTCTTTAGCAGATGTCTCTCAAACACAGCTCCAAGGGAAAAATGAAGTGGCCTTGGAGTTTCATGTGGATGATACAACTGGAGCTAATGAGAAAGATTCTTTGATGGAAATAAGTTTTCACATACCAAATTCCAACACTCAATTTGTTGGTGATGAAAATTGTCCTCCTGCTCAGGTTTTCCGTGATAAAATCATGTCTATGGCAGACGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCTATTCTAACACCAAGGGGGCGGTACAATGTTGAATTACATATGTCATTCTTGCGGCTTCAAGGGCAGGCTAATGATTTCAAAATCCAGTACAGCAGTGTAGTTCGCCTATTTTTACTTCCCAAGTCAAATCAGCCACATACCTTTGTCATTATTAGTCTTGATCCTCCCATTCGTAAAGGACAAACTTTGTACCCGCACATTGTGATGCAGTTTGAAACTGATTACGTAGTTCAAAGCACCTTGTCAATGAGTGAAGATCTTTACAACAGCAAGTTCAAGGACAAGTTGGAGCTTTCATATAAGGGGCTCATCCATGAAGTTTTCACAACAATATTGCGTGGATTGTCTGGTGCCAAAGTTACCAAACCAGGAAAATTCAGGAGCTGTCAAGATGGTTATGCAGTGAAATCGTCTTTGAAAGCTGAAGATGGAATTTTGTATCCTCTCGAGAAGAGCTTCTTCTTTTTACCTAAACCTCCCACCCTCATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGAGGCATACTGCTGGGGGTTCAAATATGCATTATTTTGACCTTCTTATTAGACTAAAAACTGAGCAAGAGCATCTATTCCGTAATATTCAGAGAAATGAATACCACAATCTTTTTGACTTCATCAGTTCAAAGGGCTTGAAAATTATGAACCTTGGAGGTGTCCAAGCCACTGATGGTGTTGCTGCTGTTCTTCAAGAAGATGATGATGATGCTGTTGATCCCCATCTTGAGCGCATAAAAAATGCAGCTGGTGGAGATGAGAGTGATGAAGAGGATGAGGATTTTGTTGCCGATGAGGATGATGGTGGTTCTTCAACTGATGATTCTGGAGATGAGTCTAATGCAAGTGAAGATGGTGGGAAAGAGAAGCCCGCCAAAAAGGAATCAAAGAAGGAACTGTCTTCTAAGGCATCTACTTCTAAGAAGAGATCTAAAGATGGAGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCTAATGCCCCGAAGAGAGCATTGTCTGGTTTCATGTTTTTCTCCCAAATGGAGAGGGAGGTTCGTTCTTTGTTTACTTATGACCATGGCAGTAGTAGTTTACTTTTTTTGGATTTGGGAGGCTTATGTAGTACTAAGTATATGGGGGACAAGAATCTGAAGAAAAGCAATCCTGGAATTTCATTTACTGATGTAGGAAGAGTACTTGGAGAGAAATGGAAGAAGATGTCAGCGGATGAGAAGGAACCATATGAAGCTAAAGCTCGTGCAGATAAAAAACGTTACAAGGATGAGATCAGCGGGTACAAGAATCCGCAACCTATGAACGTAGACTCAGGAAATGAATCTGATAGTGCTTGA 1974 0.4113 MLGLQNPGQMKIFSGGILWKRQGGGKAIEVDKADIMGVTWMKVPRTNQLGVRIKDGLYYKFTGFRDQDMPSLTSFFQNTCGITPEEKHLSVSGRNWGDFDLNGNMLTFMVGSKQAFEVSLADVSQTQLQGKNEVALEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENCPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYNVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVQSTLSMSEDLYNSKFKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHTAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISSKGLKIMNLGGVQATDGVAAVLQEDDDDAVDPHLERIKNAAGGDESDEEDEDFVADEDDGGSSTDDSGDESNASEDGGKEKPAKKESKKELSSKASTSKKRSKDGDEDGKKKKQKKKKDPNAPKRALSGFMFFSQMEREVRSLFTYDHGSSSLLFLDLGGLCSTKYMGDKNLKKSNPGISFTDVGRVLGEKWKKMSADEKEPYEAKARADKKRYKDEISGYKNPQPMNVDSGNESDSA 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1348 657 FunFam Fact complex subunit ssrp1 186 325 - -
Lele15g1348 657 SUPERFAMILY HMG-box 529 644 IPR036910 -
Lele15g1348 657 MobiDBLite consensus disorder prediction 614 657 - -
Lele15g1348 657 CDD PH2_SSRP1-like 329 428 - -
Lele15g1348 657 MobiDBLite consensus disorder prediction 463 490 - -
Lele15g1348 657 CDD HMGB-UBF_HMG-box 542 638 - -
Lele15g1348 657 Gene3D - 2 79 IPR011993 -
Lele15g1348 657 MobiDBLite consensus disorder prediction 614 638 - -
Lele15g1348 657 MobiDBLite consensus disorder prediction 457 545 - -
Lele15g1348 657 SMART hmgende2 541 642 IPR009071 -
Lele15g1348 657 Gene3D - 186 325 - -
Lele15g1348 657 CDD PH1_SSRP1-like 194 327 - -
Lele15g1348 657 FunFam FACT complex subunit SSRP1 326 435 - -
Lele15g1348 657 Pfam Histone chaperone Rttp106-like 337 426 IPR013719 -
Lele15g1348 657 Gene3D - 84 166 IPR038167 -
Lele15g1348 657 Pfam HMG (high mobility group) box 589 641 IPR009071 -
Lele15g1348 657 Pfam Structure-specific recognition protein (SSRP1) 93 161 IPR024954 -
Lele15g1348 657 PRINTS Structure-specific recognition protein signature 316 329 IPR000969 GO:0003677|GO:0005634
Lele15g1348 657 PRINTS Structure-specific recognition protein signature 387 403 IPR000969 GO:0003677|GO:0005634
Lele15g1348 657 PRINTS Structure-specific recognition protein signature 403 421 IPR000969 GO:0003677|GO:0005634
Lele15g1348 657 PRINTS Structure-specific recognition protein signature 251 267 IPR000969 GO:0003677|GO:0005634
Lele15g1348 657 PRINTS Structure-specific recognition protein signature 206 222 IPR000969 GO:0003677|GO:0005634
Lele15g1348 657 PRINTS Structure-specific recognition protein signature 343 361 IPR000969 GO:0003677|GO:0005634
Lele15g1348 657 PRINTS Structure-specific recognition protein signature 361 378 IPR000969 GO:0003677|GO:0005634
Lele15g1348 657 PRINTS Structure-specific recognition protein signature 228 244 IPR000969 GO:0003677|GO:0005634
Lele15g1348 657 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 542 641 IPR009071 -
Lele15g1348 657 Pfam POB3-like N-terminal PH domain 5 85 IPR035417 -
Lele15g1348 657 PANTHER FACT COMPLEX SUBUNIT SSRP1 6 626 - -
Lele15g1348 657 Gene3D High mobility group box domain 524 642 IPR036910 -
Lele15g1348 657 SUPERFAMILY PH domain-like 193 427 - -
Lele15g1348 657 SMART Rtt106_2 335 428 IPR013719 -
Lele15g1348 657 MobiDBLite consensus disorder prediction 491 533 - -
Lele15g1348 657 MobiDBLite consensus disorder prediction 643 657 - -
Lele15g1348 657 Gene3D - 326 434 IPR011993 -
Lele15g1348 657 FunFam FACT complex subunit SSRP1 83 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1348 Lele-ChrLele15 7819051 7823984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1348 538 641 ARID Transcription Factor Family AT1G04880 30.769 9.42e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele15g1348 Rtt106 2.2e-20 CL0266