Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1347 ATGGCAGAAAGTAGAGTTAGAATTACGTTACTGTTAATGGCTACCTTGGCCATTACAGTTCCATGCCTCGTAGACGCAAACATCGGAGAGTTCGACGAATATCTGATAGGAAAAGCTAAGGAGGCCCGGAGAGCGGCTCTTGAAGCATACGAACCGAACCCTTTGAGCGTCGCTTCAGAGCTTAATATGCACGTTCATCTGGCGATGAATGAGGCCAACAAGGAGAATAACACGAGAGGGAGGAACCTGCAGGGGAAGAAAGGCGGAGCGTGCCAGGCCACCAACCCAATCGACCGATGCTGGAGATGCGACAAAAACTGGGAGCAGAATCGCTTTAAGTTAGCCACATGTGCGATGGGTTTCGGCCGCAAGACCACCGGCGGGTTGGGTGGTAAGATCTACGTCGTGAATGATTCTTCCGACGGAAACCTAACTGACCCGGAACCCGGAACTCTGAGGTACGGGGTGATTCAGAAGGAGCCATTGTGGATCATATTCAAGGGCAGCATGGTGATCAAGTTCAAACAGGAGTTGATGGTGAATTCCCACAAGACAATCGACGGACGCGGAGCCAATATTCATATAAAGAACGGCGCCGGCATCACTGTGCAAATGGCTCAGAACGTCATCATCCACAACCTTCGCTTTCGCAATATCAGAGCTAGGAAGGGTGGCATAATAAGGGACTCCCCGGACCATGTCGGGCTGAGAACCAGAAGCGACGGTGACGGCATCAGCATCTACGGCGCCACCAACGTCTGGATAGATCACGTTTCGATGTCCAACGCGGACGATGGGCTGATCGACGCAATCATGGGTTCTACCGCCATTACCATATCAAATTGCCACATGACCAAGCACAACGATGTGATGCTGTTCGGGGATGGACCGAATTATCCTGAGGACAAGATAATGCAGGTAACGGTGGCGTTCAACCACTTCGGGAACGGATTGGTACAGAGGATGCCGAGATGCAGATTTGGGTTCGTCCACGTGGTGAACAACGATTTTACTCACTGGCTCATGTACGCTATTGGAGGAAGCTCGGCCCCGACCATACTGAGCCAAGGAAACCGATTCAACGCTCCGAACAACAACGCGACGAAGGAGATAACGAACAGGGTGGGAACGAAGCCGGAGGATTGGAAAGACTGGAAATGGAAATCTGAGCTGGACCAGTTGGATAACGGAGCCGTTTTCGTTGAATCGGGAGGACCGTTAACCTCCATCGACAGAAGCACTTTGATCCAACCAAGGCCTGGGATTGAAGCTCCAGTGCTTTCAAAATATTCGGGTGCGATGAGGTGCAAGATTGGCAAGCCTTGTTAA 1329 0.5147 MAESRVRITLLLMATLAITVPCLVDANIGEFDEYLIGKAKEARRAALEAYEPNPLSVASELNMHVHLAMNEANKENNTRGRNLQGKKGGACQATNPIDRCWRCDKNWEQNRFKLATCAMGFGRKTTGGLGGKIYVVNDSSDGNLTDPEPGTLRYGVIQKEPLWIIFKGSMVIKFKQELMVNSHKTIDGRGANIHIKNGAGITVQMAQNVIIHNLRFRNIRARKGGIIRDSPDHVGLRTRSDGDGISIYGATNVWIDHVSMSNADDGLIDAIMGSTAITISNCHMTKHNDVMLFGDGPNYPEDKIMQVTVAFNHFGNGLVQRMPRCRFGFVHVVNNDFTHWLMYAIGGSSAPTILSQGNRFNAPNNNATKEITNRVGTKPEDWKDWKWKSELDQLDNGAVFVESGGPLTSIDRSTLIQPRPGIEAPVLSKYSGAMRCKIGKPC 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1347 442 Pfam Pectate lyase, N terminus 27 83 IPR007524 GO:0030570
Lele15g1347 442 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Lele15g1347 442 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Lele15g1347 442 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Lele15g1347 442 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Lele15g1347 442 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Lele15g1347 442 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Lele15g1347 442 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Lele15g1347 442 PANTHER PECTATE LYASE 18-RELATED 42 440 IPR045032 GO:0030570
Lele15g1347 442 SUPERFAMILY Pectin lyase-like 95 405 IPR011050 -
Lele15g1347 442 SMART amb_all 169 366 IPR002022 -
Lele15g1347 442 Pfam Pectate lyase 175 360 IPR002022 -
Lele15g1347 442 Gene3D - 94 434 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1347 Lele-ChrLele15 7812375 7817772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1347 8 442 Polysaccharide Lyase AT1G14420 52.116 1.78e-168 479