Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1325 ATGAGTTGGGGTTCGCATAGCAAGACGGAGGTCACTACGATGATGAAGAAGAAGAAAACTAGTGGCTCTGTTCGATCCATTTTCATGCACGCCGATTCCCAAGATTGGTTTTTGATGGTTCTTGGCGTGTTGGGGTCTTTCGGCGATGGCTTCACAGGGCCTACTTTGTTGTTTATCAGTAGCCGCTTGATGAACAATATTGGAGGGGCCTCGTCTCGGATGAATGTATCTGCTTTTGCTCATAACACTAATGAGAATGCGGTGGCTCTGTTATATTTGGCCTGTGGATCATTTTTGGCATGCTTCCTCGAGGGCTATTGTTGGACGAGAACAGGGGAGAGACAAGCAGCGAGAATGAGATCCAGGTATTTGAAAGCAGTGCTGAGACAAGAAGTTGCATACTTTGATTTGCAAGCGACGAGCACGTCCGAGGTCATCACCAGCGTCTCTAACGATAGCATCGTAATTCAAGATTTTCTTAGCGAGAAGGCTCCAAATTTGCTGACGAATCTCTCTATGTTCGTCGCGAGCTACGTCGTGGCCTTTTCAATGTTCTGGAGATTGGCAATTGTAGCCTTACCTTTCGTGGTTCTTCTAGTAATACCTGGTTTAATGTACGGAAGGACATTAACGGGGTTGGCTAGCAAGATCAGGGACGAATATAACCAGGCTGGTGCAATGGCAGAGCAAGCAATATCTTCCATCAGAACCGTATATTCCTTTGCTGGCGAAACCAAAACCATAGCTAATTTCTCCTCTGCTTTACAGGGCTCAGTCAAGCTGGGTCTAAAACAAGGCTTAGCTAAAGGTTTAGCCATAGGAAGCAACAGTATTGTGTTCGTCATATGGTCCTTCATTTGCTATTACGGTAGCAGACTCGTCATGTACCATGGCGCCCAAGGTGGCACTGTCTTCGCCGTCGGAGCAGCCATGGCTCTCGGTGGATTATCGCTGGGAGCTGGTTTATCCAACGTGAAGTACCTGTCGGAAGCAAGTTCAGCAGGGGAACGAATAATGGAGGTGATAAAGAGAACCCCCGAGATCGATTCAGAGAACATGGGAGGTGAGATTCTGGAGAGAATTCACGGGGAAGTGGAGTTCGATCGCGTGGAGTTTGCATACCCATCGAGGCCAGACTGCACTATCCTGAAGGATTTCAGGGTAAAGATTCCGGCGGGGAAGACGGCGGCGCTGGTGGGAGGGAGTGGGTCAGGGAAGTCGACGGTGATATCACTTTTGCAGAGATTCTACGACCCTATGGGAGGGGAAATACGTGTGGACGGGGTGGGAATTAGGAGGCTGCAGCTAAAGTGGATGAGATCGCAGATGGGACTGGTGAGCCAAGAACCGGCTCTGTTCGGGACAAGCATTAAAGACAACATACTGTTTGGGAAAGAGGACGCTAGTGAGGAAGAGATCGTGGAGGCTGCAAAAGCTTCAAATGCTCATGATTTCATTTCTCAGTTGCCTCTGGGATACGATACCCAGGTGGGTGAACGAGGCGTTCAAATGTCAGGAGGACAAAAACAGAGGATTGCTATTGCGCGGGCAATAATAAAAAAGCCACGAATCCTCCTGCTTGATGAAGCAACAAGTGCTCTAGACACCGAATCCGAGCGAGTTGTTCAAGAAGCTCTGGATAATGCAGCCGTTGGGCGCACCACTATCATCATTGCTCACCGCCTGTCCACCATTCGGAACGCCGACGTTATCGCCGTCCTACAAAATGGAAGCCTCATAGAAATGGGATCGCATGATGAGCTCGTCGAAAACGAAAATGGGCTTTACACTTCTATCGTTCGTCTCCACCAAAAAGAGAAATCTAGAACGACTCAAGAGGATACAGTCGTCACCTCTACCTCTTCCACCGTAGCAGATAGGGGCATGAACAATCCCAGCAGTCGAAGATTATCTCTCGTGACTCGATCTAACTCTGCAAATTCAGTAGGACAGAGTCGAGTTTCAAGTGCCGATGAAGAAACCGATGTGGCTACAGTAGAAAAACTCCCTGTTCCGTCGTTTCGGAGGTTGCTTGCCCTGAATCTCCCAGAATGGAAGCAGGCAACTTTAGGGTGTTTTAGTGCGTCTCTGTTCGGTGCAATTTACCCATTGTTCTCATTCTCAATGGGGTCCATGGTTTCTACGTTTTTTCTGACAGACCATGACGAGATTAAAAGGAAGATGAAGGCTTACGCGTTTTGTTATCTGGGTTTATTGGCGTCGTCATTAATTACTAGCATAAGCCAGCATTATAGTTTCGCTTACATGGGTGAATACTTGACCAAAAGGATAAGAGAGAGAACGTTTTCAAAGATACTCACATTTGAAGTTGGCTGGTTCGATCAGTCCGAAAATACAAGTGGTGCGGTTTGCTCAAGACTTGCCAAAGATGCCAATGTGGTGAGATCTCTGATAGGAGATAGAATGTCTCTGTTGATACAAACTTTCTCCACGGTAGTAATTGCTTTCACAATGAGCCTAGTGATTTCGTGGAGGTTCGCCGTTGTTGTTATCGCCGTTCAACCCCTGATCGTAATCAGCTACTACACTAGGAGGGTCCTACTCAAGAGCATGATCAAGAAGGCCACTAAGGCCCAAGATGAATGCAGCAAGCTAGCCGCAGAAGCTGTTTCCAACCTTCGTATCGTTACAGCATTCTCTTCCCAGGGCAGAATCCTCAAAATGCTTGAAAAAGCCCAAGAAGGCCCAAGAAAGGAGAGCCTGAGACAGTCATGGTTTGCAGGTTTTGGGCTTGCTTTCTCACAGAGTATCACGGCTTGTACTTGGGCCTTAGACTTTTGGTATGGTGGAAAGCTAATGTCCGCTGGTCTTATCAAAGCCGAAGCACTGTTTCAGACATTCATGGTACTAATGGGCACAAGCCGGGTAATTGCAGATGCCGGAAGCATGACTTCCGACCTCGCCAAAGGCGCAGATTCTTTGGGCTCACTTTTTGCTGTTCTCGACCGCGGCACAAAAATTGATCCGGATCACCAAAACGGGTATAAACCCGATAAGTTCACAGGCCTAATAGAACTTCGTGATATTCATTTCGCGTACCCGGCTAGGCCGAACGACATGATCTTTCGAGGGTTCTCAATGAGAATGGAAGCGGGGAAGTCAACGGCATTGGTTGGCCAAAGTGGGTCTGGGAAGTCAACCATCATAGGATTAATCGAGAGATTCTACGATCCATTAAAAGGGACAGTAAATATAGATGGGAGAAACATAAAGTCATACCATCTCAGGACCTTGAGAGAACACATCGCACTGGTGAGCCAAGAACCGATGTTATTTGCTGGGAGCTTGAAGGAGAACATTGCATACGGAGCTAAGGATAAGGTTGACGAAGCAGAGACCATAGAGGCAGCTAAGATAGCAAATGCTCATGAATTCATATCAAGCTTGAGGGACGGATATGAGACATGGTGTGGGGAGAGAGGGGTGCAACTATCAGGTGGTCAGAAGCAGAGAATAGCAATAGCGAGAGCGATATTGAAGAACCCTACGGTGTTGCTGCTGGATGAGGCGACGAGTGCACTGGATAACCAGTCGGAGAGGACGGTGCAAGAAGCGTTGGAGCGCGTTATGGTGGGGAGGACGAGCGTGGTGGTGGCGCATAGGTTGAGCACTATTCAGAAGTGTGATGCGATCGCAGTATTAGAGAAGGGAAAGGTGGTAGAGAAAGGGACGCACTCGTCTTTGCTGGGCAAGGGACCAGGTGGGGCTTATTATGCTTTGGCTAGTCTCCAAAGGAGGAGCTCCAGTTCCATTAAACAACCCAGCTGA 3789 0.4811 MSWGSHSKTEVTTMMKKKKTSGSVRSIFMHADSQDWFLMVLGVLGSFGDGFTGPTLLFISSRLMNNIGGASSRMNVSAFAHNTNENAVALLYLACGSFLACFLEGYCWTRTGERQAARMRSRYLKAVLRQEVAYFDLQATSTSEVITSVSNDSIVIQDFLSEKAPNLLTNLSMFVASYVVAFSMFWRLAIVALPFVVLLVIPGLMYGRTLTGLASKIRDEYNQAGAMAEQAISSIRTVYSFAGETKTIANFSSALQGSVKLGLKQGLAKGLAIGSNSIVFVIWSFICYYGSRLVMYHGAQGGTVFAVGAAMALGGLSLGAGLSNVKYLSEASSAGERIMEVIKRTPEIDSENMGGEILERIHGEVEFDRVEFAYPSRPDCTILKDFRVKIPAGKTAALVGGSGSGKSTVISLLQRFYDPMGGEIRVDGVGIRRLQLKWMRSQMGLVSQEPALFGTSIKDNILFGKEDASEEEIVEAAKASNAHDFISQLPLGYDTQVGERGVQMSGGQKQRIAIARAIIKKPRILLLDEATSALDTESERVVQEALDNAAVGRTTIIIAHRLSTIRNADVIAVLQNGSLIEMGSHDELVENENGLYTSIVRLHQKEKSRTTQEDTVVTSTSSTVADRGMNNPSSRRLSLVTRSNSANSVGQSRVSSADEETDVATVEKLPVPSFRRLLALNLPEWKQATLGCFSASLFGAIYPLFSFSMGSMVSTFFLTDHDEIKRKMKAYAFCYLGLLASSLITSISQHYSFAYMGEYLTKRIRERTFSKILTFEVGWFDQSENTSGAVCSRLAKDANVVRSLIGDRMSLLIQTFSTVVIAFTMSLVISWRFAVVVIAVQPLIVISYYTRRVLLKSMIKKATKAQDECSKLAAEAVSNLRIVTAFSSQGRILKMLEKAQEGPRKESLRQSWFAGFGLAFSQSITACTWALDFWYGGKLMSAGLIKAEALFQTFMVLMGTSRVIADAGSMTSDLAKGADSLGSLFAVLDRGTKIDPDHQNGYKPDKFTGLIELRDIHFAYPARPNDMIFRGFSMRMEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGTVNIDGRNIKSYHLRTLREHIALVSQEPMLFAGSLKENIAYGAKDKVDEAETIEAAKIANAHEFISSLRDGYETWCGERGVQLSGGQKQRIAIARAILKNPTVLLLDEATSALDNQSERTVQEALERVMVGRTSVVVAHRLSTIQKCDAIAVLEKGKVVEKGTHSSLLGKGPGGAYYALASLQRRSSSSIKQPS 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1325 1262 SUPERFAMILY ABC transporter transmembrane region 672 990 IPR036640 GO:0005524|GO:0016020
Lele15g1325 1262 SMART AAA_5 392 578 IPR003593 -
Lele15g1325 1262 SMART AAA_5 1038 1231 IPR003593 -
Lele15g1325 1262 SUPERFAMILY ABC transporter transmembrane region 29 347 IPR036640 GO:0005524|GO:0016020
Lele15g1325 1262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Lele15g1325 1262 CDD ABC_6TM_Pgp_ABCB1_D2_like 678 994 - -
Lele15g1325 1262 FunFam ABC transporter B family member 4 355 611 - -
Lele15g1325 1262 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 338 - -
Lele15g1325 1262 MobiDBLite consensus disorder prediction 607 659 - -
Lele15g1325 1262 PANTHER ABC TRANSPORTER B FAMILY 14 701 - -
Lele15g1325 1262 MobiDBLite consensus disorder prediction 613 659 - -
Lele15g1325 1262 Pfam ABC transporter transmembrane region 690 958 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele15g1325 1262 Pfam ABC transporter transmembrane region 40 307 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele15g1325 1262 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Lele15g1325 1262 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 690 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele15g1325 1262 Gene3D - 355 604 IPR027417 -
Lele15g1325 1262 FunFam ABC transporter B family member 1 26 362 - -
Lele15g1325 1262 CDD ABC_MTABC3_MDL1_MDL2 1011 1251 - -
Lele15g1325 1262 Gene3D ABC transporter type 1, transmembrane domain 27 613 IPR036640 GO:0005524|GO:0016020
Lele15g1325 1262 Coils Coil 855 875 - -
Lele15g1325 1262 Pfam ABC transporter 1031 1179 IPR003439 GO:0005524
Lele15g1325 1262 Pfam ABC transporter 383 532 IPR003439 GO:0005524
Lele15g1325 1262 FunFam ABC transporter B family member 4 1001 1257 - -
Lele15g1325 1262 Gene3D ABC transporter type 1, transmembrane domain 649 999 IPR036640 GO:0005524|GO:0016020
Lele15g1325 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1001 1251 IPR027417 -
Lele15g1325 1262 Gene3D - 1001 1260 IPR027417 -
Lele15g1325 1262 CDD ABC_MTABC3_MDL1_MDL2 365 602 - -
Lele15g1325 1262 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele15g1325 1262 ProSitePatterns ABC transporters family signature. 1151 1165 IPR017871 GO:0005524|GO:0016887
Lele15g1325 1262 FunFam Putative ABC transporter B family member 8 654 999 - -
Lele15g1325 1262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1011 1248 IPR003439 GO:0005524
Lele15g1325 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 602 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1325 Lele-ChrLele15 7670750 7676629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1325 9 1258 Calmodulin-binding Proteins AT2G36910 42.767 0.0 1022