Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1324 ATGGAAATGGTGAAAGATACAACAACAAAAACCATGGGCCTGGACAGGAAAGGGAGTCTAAAACCAAAACCTAATCGGACAAAACCCAAAAAAACCAACGGGCTTGGTGTTGATGGATCTGATCTGCTTGCTCTTTCTGCAGCATATTTTCCTGAGAAAATTTACCAACTGAAAGATATGAAGAGAACTAGGGACGATGCTTATGCTTCTTCTCAATTAAAGCGACCCATGGGTTCTTCACGTGGGGATTCCTATGGCCAATCCCAAATCCCTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGGGAGGGGGAGCTACTTCACAGAAGTTGACTACCAATGACGCTTTATCATATTTGAAGGAAGTGAAAGACATGTTTCATGACCAAAGAGAAAAATATGACATGTTCTTAGAGGTCATGAAAGATTTCAAGGCTCAACGGACTGACACTGCTGGTGTCATAGCAAGAGTGAAGGAACTATTCAAAGGGCACAATAACTTGATTTTTGGATTTAACACCTTCTTGCCAAAGGGGTATGAGATTACACTAGATGAGGATGAGGCTCCTCCAAAGAAAACTGTTGAATTTGAAGAAGCTATAAGCTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAACATGTACCGCAAAGAGCACAAGGATATTGGTGAGGTCTATAGTGAGGTTGCTACCCTTTTTGAGGACCACCTGGATTTACTTGAGGAGTTTACTAGATTCTTACCAGATACTTCTGCAGCTCCTTCTACACAGCATGCTCCTTATGGTCGAAATGCATTTCCACGTTTTAGTGAGCGAGGTTCTACAACACCCATGATACGGCCAATGCAAGTGGACAAGCAACGCTATCGACGAGAAAGGCTTAATTCTCATGATCGTGATCCAAGTGTTGACCGTCCTGAACTGGATGATGACAAGGCAGTAATGAAATCTCACAAGGAGCAGAGGAAGCGTGTTGATAAGGAAAGTAGGGATAGGAAAATTCGTGACCAGGATGACAGAGAACCTGATCATGATAATAACAGGGATTTTAAATCACGTTTTTCTAACAAAAAGATATCTGTCAAGAAGGCTGAAGGTTTTGGGTTGGCAGCTGATTTTGCTTCTTATGATGACAAAGATTCCTTAAAGAGCATGTATAACCAAGCATTCAGTTTTTGTGAGAAAGTTAAGGAAAAGTTGGGCAGTTCAGATGACTACCAAGCATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATAAAAAGGAATGATTTGCAGAATTTGGTGACTGACTTACTTGGAAAGTACCCTGATCTGATGGATGAATTCAATGAATTCTTGGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATAAGTAAAAAGTCATTATGCGGTGACGGTCAATTATCCAGAACATTAAAGTTGGAGGACAAAGACAAAGACCAGAAGCGTGAGATGAATGGAGCTAAAGACAAGGAAAGACACCGGGAGAAATACTGGGGAAAATCCATTCAAGAACTGGACTTAAGTAACTGTCAACTTTGTACTCCAAGCTATCGTCTTCTGCCAGAAGATTATCCAATTCCTGTGGCCAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTTAGATGTGAGGATGACAGATTTGAGCTGGACATGTTATTAGAATCTGTAAGCTCAGCTGCCAAATGTGCAGAGGAGTTGTATAATAGCATTAATGAAAATAAGATCAATATGGAGGCTCCAATCTGTATTGAAGATCACTTTAGCGCTCTAAATTTAAGATGCATTGAACGCCTGTATGGAGATCATGGACTTGATGTCCTGGACATATTACGAAAAAATCCAACTCATGCACTTCATGTGACATTGACTCGTCTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGTTCTGATTTCAATAAGGTTTGGGCTGAAATTTATGCTAAAAACCATTACAAATCACTTGATCACCGGAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGATCACTAAATCTTTGGTGGCTGAAATCAAAGAAAAGAAAGCAAAGCAGCAGAAAGAGTATGATATTCTTCAGGCTATCGCTTCTGGAAATAAGCAGCCTCTAATCCCCCATATAGAGTTTGAATATTCGGATTTTGGGATTCATGAGGACCTATACAAACTTATTCGTTATTCATGTGAGGAGGTCTTCTCAAGTAAAGATATGTCAACTAAAATTATGAGGCTTTGGACTACCTTTTTGGAGGTGATACTTGGTGTTCCCTCTCATACTCATGGGACAGAAAATGTGGAGGACAGGAAAACTGGGCAACGTGTTGCATCAAATACAGGAGGTGATGGAAACTCCCACGGAGACTCTATTCTAATGAATTCAAGGTTGCCAAAATCTGATAATGAAGTGGATGGTAGAGTAAATGAGGCAAATAATGGTCAACAGACTAGTTTAGCAGCCAATGACAAAGAAAATGGACCTGTTGACTGTGACCGTGCTTATAGAGATGATCCTCTAATGGATAAAGGGAAGAACGATGCAGATTGTAGTGAAAAAATCTCTGGGTTGAGTAAGCAGATTGCTTCTGATGAGCAATCAACTATCGATAATACTTCATTTGCAGTTAGAGGAGAAACTAGCATGACCAAGACCAGCTTAGAAATTACTTCAGGCTTTGTGCTTAATCCAGCAAGACCAACTACTACACTAGGCGGTGATGATGGTGTTGCCATTTCTCAGGGTGTTAATGGACCTTTGATGGAGGGACGGGATATTGCTCCTCCACTTCCAGTAGCCAATGGAGTGCTAATTGAAAGCACTAAAGTCAAAAGCCATGAAGAACCTGCTGGACCTTACAAAGCTGAAAAGGAGGAGGGTGAATTATCACCCAATGCTGACTCAGAGGAGGATAATTTTCTTGGGTATGGAGACTCCAGTGGGCAGGCACTGCCTAAGTCAAAGCATAATATTGAAAGAGGAAATTATAAATCTAGAAATGGGGAGGAAGAATGCTGTCCAGAGGCTGGAGGTGATAATGGTGCAGATGCTGATGATGAGGACAGTGACAATGTTTCTGAAGCTGGTGAAGATGCCACAGGTAGTGAGTCTGCTGGTGATGCATGCTCTCGAGAAGAGCATGAGGAGGATGAAGATATGGAACATGATGATGTTGAGGGTAAGGGTGAGAGTGAAGGCGAAGCTGAGGGAATGTGTGATGCACAATCCGCTGGAGGAGAGGGCTCTTCATTACCATTATCAGAAAGGTTCCTTTTGTCTGTTAAGCCTCTCACAAAGCGTGTTTCCGCAGTTTCACTTGTTGGGGAAAGAAATAATTCCAGGGTCTTCTATGGAAATGATGATTTTTTTGTTCTTTTTAGGCTTCATCAAATACTTTATGAAAGGATCTCATTAGCGAAAAACTATTCAACGAGTGCTGAAACAAAATGGAAAGCAACAAAGGAGGCTTCTTCCCCTGATCCTTATTCAAGATTTATGAATGCACTTTACAACTTGCTTGATGGCTCTGCTGACAATGGAAAGTTTGAAGATGAGTGCCGGGCAATTATTGGAAACCAGTCATATATATTATTCACATTGGACAAGTTGATATATAAGTTGGTCAGACAGCTTCAAACAGTTGTAACGGATGAGATAGACAATAAGCTTCTCCAATTGTATGAGTATGAAAAGTCGCGGAAACCTGGGAACTTAATCGATTCAGTCTATTATGCAAATGCACGTGTCATCCTTCATGATGAGAATATATATCGTTTTGAATGTTCATGTACTCCTTCGCAAGTGTTCATTCAGCTGATGGACAATATGAATGAAAAGCCTGAGGTGTTTGCTGTTTCAATTGATCCAAATTTTTCCTTTTATCTGTATAATGATTTTCTGTCTGTCTCTCCTGGGAAAAAGGAACCCCACGGCATTATACTGCAAAGAAACAAGCGCGGATATGGAGATCTAGATGAACTTACATCTATGTGCTTAGCCATGGAAGGTGTTAAAATAATAAATGGATTGGAATGTAAGATAGCTTGCAACTCGTCCAAGATCTCCTATGTTCTGGACACGGAAGATTATTTCTTCCGCCCCAAAAGGCAAAGAAGAACATCATCAGGGACCACATCTTCCCGGCATCATCGAGATAGACAGGAAAGATTTCTCAGATTCTTATCAGTTTCATAA 4338 0.4085 MEMVKDTTTKTMGLDRKGSLKPKPNRTKPKKTNGLGVDGSDLLALSAAYFPEKIYQLKDMKRTRDDAYASSQLKRPMGSSRGDSYGQSQIPGGGGGGGGGGGVGGGATSQKLTTNDALSYLKEVKDMFHDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFEDHLDLLEEFTRFLPDTSAAPSTQHAPYGRNAFPRFSERGSTTPMIRPMQVDKQRYRRERLNSHDRDPSVDRPELDDDKAVMKSHKEQRKRVDKESRDRKIRDQDDREPDHDNNRDFKSRFSNKKISVKKAEGFGLAADFASYDDKDSLKSMYNQAFSFCEKVKEKLGSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMDEFNEFLERCENIDGFLAGVISKKSLCGDGQLSRTLKLEDKDKDQKREMNGAKDKERHREKYWGKSIQELDLSNCQLCTPSYRLLPEDYPIPVASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKCAEELYNSINENKINMEAPICIEDHFSALNLRCIERLYGDHGLDVLDILRKNPTHALHVTLTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLITKSLVAEIKEKKAKQQKEYDILQAIASGNKQPLIPHIEFEYSDFGIHEDLYKLIRYSCEEVFSSKDMSTKIMRLWTTFLEVILGVPSHTHGTENVEDRKTGQRVASNTGGDGNSHGDSILMNSRLPKSDNEVDGRVNEANNGQQTSLAANDKENGPVDCDRAYRDDPLMDKGKNDADCSEKISGLSKQIASDEQSTIDNTSFAVRGETSMTKTSLEITSGFVLNPARPTTTLGGDDGVAISQGVNGPLMEGRDIAPPLPVANGVLIESTKVKSHEEPAGPYKAEKEEGELSPNADSEEDNFLGYGDSSGQALPKSKHNIERGNYKSRNGEEECCPEAGGDNGADADDEDSDNVSEAGEDATGSESAGDACSREEHEEDEDMEHDDVEGKGESEGEAEGMCDAQSAGGEGSSLPLSERFLLSVKPLTKRVSAVSLVGERNNSRVFYGNDDFFVLFRLHQILYERISLAKNYSTSAETKWKATKEASSPDPYSRFMNALYNLLDGSADNGKFEDECRAIIGNQSYILFTLDKLIYKLVRQLQTVVTDEIDNKLLQLYEYEKSRKPGNLIDSVYYANARVILHDENIYRFECSCTPSQVFIQLMDNMNEKPEVFAVSIDPNFSFYLYNDFLSVSPGKKEPHGIILQRNKRGYGDLDELTSMCLAMEGVKIINGLECKIACNSSKISYVLDTEDYFFRPKRQRRTSSGTTSSRHHRDRQERFLRFLSVS 1445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1324 1445 MobiDBLite consensus disorder prediction 66 108 - -
Lele15g1324 1445 MobiDBLite consensus disorder prediction 874 899 - -
Lele15g1324 1445 MobiDBLite consensus disorder prediction 855 871 - -
Lele15g1324 1445 MobiDBLite consensus disorder prediction 1038 1054 - -
Lele15g1324 1445 MobiDBLite consensus disorder prediction 809 899 - -
Lele15g1324 1445 ProSiteProfiles PAH domain profile. 396 465 IPR003822 GO:0006355
Lele15g1324 1445 SUPERFAMILY PAH2 domain 106 179 IPR036600 GO:0006355
Lele15g1324 1445 MobiDBLite consensus disorder prediction 73 87 - -
Lele15g1324 1445 Gene3D Paired amphipathic helix 193 265 IPR036600 GO:0006355
Lele15g1324 1445 MobiDBLite consensus disorder prediction 821 845 - -
Lele15g1324 1445 MobiDBLite consensus disorder prediction 265 366 - -
Lele15g1324 1445 MobiDBLite consensus disorder prediction 1061 1075 - -
Lele15g1324 1445 MobiDBLite consensus disorder prediction 988 1131 - -
Lele15g1324 1445 Pfam Sin3 family co-repressor 533 623 IPR013194 -
Lele15g1324 1445 Gene3D Paired amphipathic helix 116 178 IPR036600 GO:0006355
Lele15g1324 1445 MobiDBLite consensus disorder prediction 989 1010 - -
Lele15g1324 1445 SMART hdac_interact2seq4b 529 629 IPR013194 -
Lele15g1324 1445 FunFam Paired amphipathic helix protein Sin3 116 178 - -
Lele15g1324 1445 MobiDBLite consensus disorder prediction 298 366 - -
Lele15g1324 1445 MobiDBLite consensus disorder prediction 1 37 - -
Lele15g1324 1445 MobiDBLite consensus disorder prediction 1 22 - -
Lele15g1324 1445 SUPERFAMILY PAH2 domain 398 465 IPR036600 GO:0006355
Lele15g1324 1445 Pfam C-terminal domain of Sin3a protein 1164 1412 IPR031693 -
Lele15g1324 1445 SUPERFAMILY PAH2 domain 191 263 IPR036600 GO:0006355
Lele15g1324 1445 MobiDBLite consensus disorder prediction 493 512 - -
Lele15g1324 1445 FunFam Paired amphipathic helix SIN3-like protein 193 264 - -
Lele15g1324 1445 ProSiteProfiles PAH domain profile. 194 264 IPR003822 GO:0006355
Lele15g1324 1445 ProSiteProfiles PAH domain profile. 110 180 IPR003822 GO:0006355
Lele15g1324 1445 FunFam Paired amphipathic helix protein SIN3 393 467 - -
Lele15g1324 1445 Coils Coil 725 745 - -
Lele15g1324 1445 Pfam Paired amphipathic helix repeat 217 261 IPR003822 GO:0006355
Lele15g1324 1445 Pfam Paired amphipathic helix repeat 418 462 IPR003822 GO:0006355
Lele15g1324 1445 Pfam Paired amphipathic helix repeat 133 177 IPR003822 GO:0006355
Lele15g1324 1445 Gene3D Paired amphipathic helix 394 467 IPR036600 GO:0006355
Lele15g1324 1445 PANTHER SIN3B-RELATED 109 1308 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1324 Lele-ChrLele15 7657841 7668652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1324 99 213 WRKY Transcription Factor Family AT4G12020 50.862 5.54e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele15g1324 Sin3a_C 2.7e-55 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1135 13 22073172 22083875 Lele15g1324 15 7657841 7668652 hybridization
Lele14g1032 14 20380306 20392615 Lele15g1324 15 7657841 7668652 hybridization