Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1298 ATGAATAAATTTCTGGGTATCGCAACACGAGTTGCGAGCATGGGATTCATTATATCCGTGGTGTTGCTATTTGTGGGGTTAGGGGTCTTGATCCTGCTTCAACTCTGTTTAATTATGAGAGGAGACAGAGGCACGACGACCGAGAGTGAAACCACCACCGATGAAGCAAGAAGCATGTCGAAAGATGAAATAGAGAAGCTTCCTTGTTATAATTATGTAGCCAGAGGCAATGAAACTAGTACTGTAGAATGTGCGGTGTGCTTGGACAATCTGGTTGCAGGGGATAAGTGCAGATTATTCCATACATGCAAGCACAGTTTTCATGCTCACTGTTTGGACCAATGGCTTCTTCAGACCCCCATTTGCCCTATTTGCAGGGCCAGTGTTGGCTCTTAG 396 0.452 MNKFLGIATRVASMGFIISVVLLFVGLGVLILLQLCLIMRGDRGTTTESETTTDEARSMSKDEIEKLPCYNYVARGNETSTVECAVCLDNLVAGDKCRLFHTCKHSFHAHCLDQWLLQTPICPICRASVGS 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1298 131 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 7 129 - -
Lele15g1298 131 Pfam Ring finger domain 83 126 IPR001841 -
Lele15g1298 131 SUPERFAMILY RING/U-box 83 129 - -
Lele15g1298 131 ProSiteProfiles Zinc finger RING-type profile. 84 126 IPR001841 -
Lele15g1298 131 SMART ring_2 84 125 IPR001841 -
Lele15g1298 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 130 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1298 Lele-ChrLele15 7518052 7518447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1298 55 129 C3H Transcription Factor Family AT1G74410 38.667 8.36e-16 68.9