Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1263 ATGGCTCGTCTCGCAGCTTGCTTTCTTCTCTTCTCTCTCTCTCTCATTGTTTCCTGCGTTGCAGCTCAAGACCCTGAGCTAGTTGTACAAGACGTACACAGAAGAATCAATGAGTCTAGAAGAAATTTGGGATATTTATCGTGTGGAACGGGCAACCCCATTGACGACTGCTGGAGGTGCGACCCGAACTGGGAGAGGAACCGGCAGAGGCTGGCCGATTGCGCCATCGGGTTCGGCAAGGACGCCATCGGCGGGAGAAACGGTCGAGTCTATGTGGTGACTGACTCCGGCGACGACGACCCGGTGAACCCTAAGCCAGGAACTCTGAGACACGCCGTCATACAAGACGAGCCGTTGTGGATTATCTTCAAGAGAGACATGGTGATAACCCTAAAACAAGAACTCGTTATGAACTCCTTCAAGACCATTGACGGAAGAGGAGCAAGTGTTCACATTGCCGGCGGGGGATGCCTAACTATACATTACGACAAGAACATGCAGGTCACCATCGCCTTCAACCACTTCGGAGAAGGCCTCGTCCAGAGAATGCCGAGGTGTAGGCACGGGTATTTTCATGTGGTGAACAATGATTATACACACTGGGAAATGTATGCGATTGGAGGGAGTGCGAATCCTACTATAAACAGCCAGGGAAATAGGTTTCTGGCACCGGATAATAGGTTTAGCAAGGAGGTGACGAAGCACGAGGATGCAGAAGAAGGAGAGTGGATGAACTGGAACTGGAGATCAGAAGGTGACTTGTTCTTGAATGGAGCTTATTTCAGGCAATCTGGTGCGGGAGCTTCTTCAAGCTACGCTAGGGCTTCAAGTCTCAGTGCGAGACCTTCTTCTCTTGTTGGCTCCATGACCATGACTGCTGGTGTACTCACGTGCAGGAAGGGCACGCGTTGCTGA 915 0.5126 MARLAACFLLFSLSLIVSCVAAQDPELVVQDVHRRINESRRNLGYLSCGTGNPIDDCWRCDPNWERNRQRLADCAIGFGKDAIGGRNGRVYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVITLKQELVMNSFKTIDGRGASVHIAGGGCLTIHYDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDAEEGEWMNWNWRSEGDLFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTMTAGVLTCRKGTRC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1263 304 PANTHER PECTATE LYASE 18-RELATED 162 302 IPR045032 GO:0030570
Lele15g1263 304 SUPERFAMILY Pectin lyase-like 72 304 IPR011050 -
Lele15g1263 304 Gene3D - 51 163 IPR012334 -
Lele15g1263 304 Gene3D - 164 297 IPR012334 -
Lele15g1263 304 SMART amb_all 126 227 IPR002022 -
Lele15g1263 304 Pfam Pectate lyase 163 221 IPR002022 -
Lele15g1263 304 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lele15g1263 304 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Lele15g1263 304 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Lele15g1263 304 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1263 Lele-ChrLele15 7303638 7305023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1263 159 304 Polysaccharide Lyase AT5G63180 79.054 8.45e-73 229