Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1153 ATGGTTCTTCAAAATGATATTGACTTACTAAACCCTCCAGTTGAGCTGGAGAAGAAAAAGCACAAGCTCAAGCGACTTGTTCAGTCGCCAAACTCCTTTTTCATGGATGTTAAGTGCCAGGGTTGCTTCAACATAACCACTGTATTTAGCCACTCTCAGACAGTTGTGTGCTTGATGCTGGTGCACGAACTATTGAATTCTTCTTTGTGGTTTTTCTACTATGCTTGTGTCCTGAATCACCTTTTTGCCGTAATTAGAGTCATGTGGTCAGATGCATTCTGGTTGATTTGGCTGTCGGAAGCTATTATGTCTTTTGTTGTGGCCCGAACAGGGCGACATCGACAGCGTTATGAAGACAATTTTCGACTTGTGTCTGGGTGTATTCCCTACAGATGGAGGAAGGACATCAATGATCAAAAGGGGCATTCAGAGTACATAATAGAAGTTCTTATGGTTACTTCACCAAAGCGTGATGATCTCGTATTCCCAAAGGGAGGATGGGAGGATGATGAAACTGTCATCGAAGCCGCTTGTCGAGAAGCGTTAGAGGAAGCAGGGGTCAAAGGAATACCAAGAGAAAACCCCTTGGGAATGTGGGAATTTAGAAGCAAAAGCAGTCAGGACTTGTGCAACCTGGAAGGAGGCTGCAGAGGATACATGTTTGCCTTGGAGGTCACTGAAGAACTTGAGACCTGGCCGGAGCAGAAAAACCGCCATCGCCAATGGTTAAATGTTAGAGAGGCGTTTAGACACTGCCGGTACGATTGGATGTGTCAGGCATTAGAAGAGTTCCTGAAAGTGATGGAAGAGGACAGGGAGCTTCATCAGAAGCAGGAAGAGAAATTTCCAGAAGTGTCAACTAACATCTTTATAATACCTTCTACTACTACAACAACTACTCAACATCATAGTATGTCACTAAAACACACGCCACTTTCTGCAAATGATACCATAGCCATTCACTCTGGTTGTTGA 975 0.441 MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVCLMLVHELLNSSLWFFYYACVLNHLFAVIRVMWSDAFWLIWLSEAIMSFVVARTGRHRQRYEDNFRLVSGCIPYRWRKDINDQKGHSEYIIEVLMVTSPKRDDLVFPKGGWEDDETVIEAACREALEEAGVKGIPRENPLGMWEFRSKSSQDLCNLEGGCRGYMFALEVTEELETWPEQKNRHRQWLNVREAFRHCRYDWMCQALEEFLKVMEEDRELHQKQEEKFPEVSTNIFIIPSTTTTTTQHHSMSLKHTPLSANDTIAIHSGC 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1153 324 CDD Nudix_Hydrolase_9 123 257 - -
Lele15g1153 324 ProSitePatterns Nudix box signature. 165 186 IPR020084 GO:0016787
Lele15g1153 324 Gene3D - 5 67 IPR023407 -
Lele15g1153 324 FunFam Nudix hydrolase 13 mitochondrial 106 267 - -
Lele15g1153 324 SUPERFAMILY Nudix 110 266 IPR015797 -
Lele15g1153 324 Pfam Ribosomal protein S27 30 56 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lele15g1153 324 ProSiteProfiles Nudix hydrolase domain profile. 120 265 IPR000086 -
Lele15g1153 324 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 107 270 - -
Lele15g1153 324 Coils Coil 258 281 - -
Lele15g1153 324 SUPERFAMILY Zn-binding ribosomal proteins 30 59 IPR011332 GO:0006412
Lele15g1153 324 FunFam 40S ribosomal protein S27 1 68 - -
Lele15g1153 324 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 106 268 - -
Lele15g1153 324 Pfam NUDIX domain 149 257 IPR000086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1153 Lele-ChrLele15 6668706 6676717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1153 1 56 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 96.429 1.45e-34 119