LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele15g1107	ATGTTCTCTTCTTATACCCGAGCAAAACCTGTCCACTCTGCTCGGGAGACAAATCACTCAGCTGAACGGAGTGGACCGGGTCTCAATCACAACGTCGTGGAAGCCAAACCCATCCAAGACACAATTACCAATCGCGTAGGCGGAATCGAGGCTCGAGGTAGATGGTTCCGGGATATCGCGGCTGAGAGCAGGGTAAAGATTCTGGATGACCCTGATCGACCAGTCCGGGTTGTCGGGCGGGACCCGAAAGATCTCGGGCGCACACTCGTTCTCTTGGCCGATGCAGAAGGGTCATCTTTATTGGGGCGGGTTGGGATTGATGGGGGATTTGGATTTGAAATCGGAGGGCCTTTTGGCTCTGGCCGGATGGCTGTAAAGGAATTTCGTGATCGAGGTACCAAAGTTAATGACTACATATTACCTATCCTTTTCCCGTTCGGTTCGATCTGTGCTGAAATTTTGCATCTGTCAACAACACGTAAGCTTGTTGAAATTTTCAGAGCGACTCTAGTGGGCTATGATTTGAATGGGGAGAGGATGCCAGAGTTGAGAAGTGGAGCTAGGAGATCAAAGCGGCTTGGTGATCTTCAGCCTGCCCCACAACCTATTGAAGAGAACTGCGCACAAACTGCTCCAAACAAGACCAGAAGGAGAGTTGGAGGTGGAAGAGGAAGAGGTTGGAATGCCCCAGCTGTAGCAAAAGGAACTTCACCAGCAGTGCCCACAAGACGAACTGCAGCTGGTAGGGGCCGGGGAGGCAGATTGGTTGATCTTGTTCCTGAACCTGTTGCACTTGGGGCACCTGAACCTGTTCTTAATCGTGAAGAGGTAGCAGCCAATAATAATATTTTGATGGCGGGTGGAAGTGCAGACAAGGTGGCAGGAGCTGAAGAGGAGGCATGCACAACCCCTGTTCCTGAAACGGTACAAGTTGGCAGTTCTCCTTTATATAAGATAGAAACGAAGTTGGGTAAGGGTGGTTTCGGTCAAGTATATGTTGGCAGAAGGGTAAGTGGTGGCTCTGATCGGACGGGTCCTGATGCAATTGAGGTTGCACTGAAGTTTGAACATAGAAATAGTAAAGGTTGCAATTATGGGCCTCCTTACGAGTGGCAAGTCTACAATACTCTGAACGGTTGTTATGGCATTCCCTGGGTTCATTACAAGGGTCGCCAAGGAGATTTCTATATACTGGTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTATGGAATTCTCTTGGCCAGTCGATGTCCCCAAATATGGTTGCGTGCATTGCAGTGGAGGCAATATCAATTCTTGAGAAGCTCCATATGAAAGGGTTTGTGCATGGAGATGTTAAACCAGAGAACTTTTTACTTGGTCAACCTGGAACAGCTGATGAGAAGAAGTTATATCTTATTGATCTTGGTTTGGCATCTAAATGGAAGGACACATCTGGTCAACATGTTGAATATGATCAGAGGCCTGACGTGTTTAGGGGAACCGTAAGATATGCCAGTGTACATGCACATTTAGGTAGGACTGGAAGTAGGAGGGACGATCTTGAGTCCCTGGCATATACATTAATATTTCTTATAAAAGGGAGGTTGCCTTGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTTAGTAAGAAAAAGATGGGAACTTCTCCAGAGTTGATGTGCTGCTTTTGTCCTGCACCATTCAAGCAGTTCCTTGAAGCTGTTACTAACATGAGATTTGATGAGGAGCCCAACTATTCCAAGCTTATATCATTATTTGATAGCTTGATTGAACCATCTTCTCAGTTGAGACCAATCAGAATTGATGGAGCTTTAAAGGTTGGACAAAAGAGGGCTAGAATGCTTATAAATCTGGAAGATGATGAGCAGCCAAAAAAGAAAGTGCGATTGGGGAATCCTGCTACTCAGTGGATATCAGTGTATAATGCACGGCGTCCCATGAAACAGAGATATCACTATAATGTATCAGATGGTAGGCTTCGACAGCACGTAGACAAGGGTAATGAGGATGGATTATATATCAGCTGCGTGGCCTCCTCATCAAATCTTTGGGCCCTAACCATGGATGCAGGAACGGGTTTCTCCTCTCAGGTCTATGAGTTGTCCCCGGTCTTCCTGCACAAGGATTGGATTATGGAACAGTGGGAGAAAAATTACTATATTAGTTCTATAGCTGGTGCAACAAATGGGAGTTCCTTGGTTGTTATGTCCAAAGGAACTCCGTACACCCAGCAGTCCTACAAAGTAAGTGAATCATTCCCTTTCAAATGGATCAATAAGAAGTGGAAAGAAGGATTCCATGTTACCTCCATGACCACTGCTGGCAGTCGATGGGGCGTTGTTATGTCCAGGAATGCAGGGTATTCTGATCAGGTTGTGGAGCTGGACTTCTTATACCCAAGTGAAGGTATTCATCGGCGATGGGAGAGTGGTTACCGGATAACATCTATAGCTGCTACTGCTGATCAGGCAGCCTTCATTCTTAGCATACCAAAACGCAAATTGCTCGATGAAACTCAAGAGACTCTACGTACCTCTGCCTTCCCTAGCACCCATGTGAAGGAAAAATGGACCAAGAATCTTTATATAGCCTCAATATGTTATGGGAGGACCGTTTGTTAG	2634	0.4632	MFSSYTRAKPVHSARETNHSAERSGPGLNHNVVEAKPIQDTITNRVGGIEARGRWFRDIAAESRVKILDDPDRPVRVVGRDPKDLGRTLVLLADAEGSSLLGRVGIDGGFGFEIGGPFGSGRMAVKEFRDRGTKVNDYILPILFPFGSICAEILHLSTTRKLVEIFRATLVGYDLNGERMPELRSGARRSKRLGDLQPAPQPIEENCAQTAPNKTRRRVGGGRGRGWNAPAVAKGTSPAVPTRRTAAGRGRGGRLVDLVPEPVALGAPEPVLNREEVAANNNILMAGGSADKVAGAEEEACTTPVPETVQVGSSPLYKIETKLGKGGFGQVYVGRRVSGGSDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYNTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPNMVACIAVEAISILEKLHMKGFVHGDVKPENFLLGQPGTADEKKLYLIDLGLASKWKDTSGQHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVSKKKMGTSPELMCCFCPAPFKQFLEAVTNMRFDEEPNYSKLISLFDSLIEPSSQLRPIRIDGALKVGQKRARMLINLEDDEQPKKKVRLGNPATQWISVYNARRPMKQRYHYNVSDGRLRQHVDKGNEDGLYISCVASSSNLWALTMDAGTGFSSQVYELSPVFLHKDWIMEQWEKNYYISSIAGATNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWESGYRITSIAATADQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWTKNLYIASICYGRTVC	877

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele15g1107	877	Pfam	Protein kinase domain	317	548	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele15g1107	877	SMART	serkin_6	317	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele15g1107	877	ProSitePatterns	Protein kinases ATP-binding region signature.	323	354	IPR017441	GO:0005524
	Lele15g1107	877	FunFam	Casein kinase 1-like protein	289	636	-	-
	Lele15g1107	877	MobiDBLite	consensus disorder prediction	1	32	-	-
	Lele15g1107	877	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	442	454	IPR008271	GO:0004672\|GO:0006468
	Lele15g1107	877	MobiDBLite	consensus disorder prediction	214	254	-	-
	Lele15g1107	877	Gene3D	Transferase(Phosphotransferase) domain 1	285	638	-	-
	Lele15g1107	877	SUPERFAMILY	Protein kinase-like (PK-like)	317	603	IPR011009	-
	Lele15g1107	877	PANTHER	CASEIN KINASE-RELATED	318	840	-	-
	Lele15g1107	877	ProSiteProfiles	Protein kinase domain profile.	317	594	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele15g1107	877	CDD	STKc_CK1	317	590	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele15g1107	Lele-ChrLele15	6414908	6425081	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele15g1107	434	590	MAP Kinase Kinase Kinase	AT5G50180	26.061	3.70e-08	54.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1-Pl	Lele15g1107		Pkinase	5.8e-16	CL0016