Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1099 ATGGGGCTCGAACAGATGATGAGCGTCATTGTTGCGGGCCCGGATGGGGTTGCTGATGTTTCAATCACAGACAGACAGCTACCACTAAGTGGAGTTCATTCCATACTTGGGAGGGCAGTCGTTGTGCATGCTGATCCTGACGATCTTGGTAGAGGTGGGCATGAACTAAGCAAGACCACTGGTAATGCAGGTGCAAGAGTAGGATGCGGTAATCCTTCTATTCTACAATCAATTTCGCTATTACTAAACTAA 252 0.4762 MGLEQMMSVIVAGPDGVADVSITDRQLPLSGVHSILGRAVVVHADPDDLGRGGHELSKTTGNAGARVGCGNPSILQSISLLLN 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1099 83 Pfam Copper/zinc superoxide dismutase (SODC) 10 71 IPR001424 GO:0006801|GO:0046872
Lele15g1099 83 SUPERFAMILY Cu,Zn superoxide dismutase-like 7 73 IPR036423 GO:0006801|GO:0046872
Lele15g1099 83 PRINTS Cu-Zn-superoxide dismutase family signature 47 73 IPR001424 GO:0006801|GO:0046872
Lele15g1099 83 PRINTS Cu-Zn-superoxide dismutase family signature 22 44 IPR001424 GO:0006801|GO:0046872
Lele15g1099 83 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 10 71 IPR024134 GO:0005507
Lele15g1099 83 Gene3D Superoxide dismutase, copper/zinc binding domain 6 77 IPR036423 GO:0006801|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1099 Lele-ChrLele15 6366955 6368279 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1346 13 23387627 23391349 Lele15g1099 15 6366955 6368279 hybridization
Lele14g1253 14 21713813 21716611 Lele15g1099 15 6366955 6368279 hybridization