LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele15g1097	ATGGAGATTCACTTCCAGCAACCAAAGAAGTTTCAGAAAGCTTCTGTTGTTCCAATGAGCAGAGGAGGAGGCAAGTTCAAAGGAAGGAACAAGAACAATAATGGTACAAACAAATTTGTTGGGGTGAGACAAAGACCTTCTGGAAGATGGGTGGCTGAAATCAAAGACACAACACAGAAGATAAGAATGTGGCTTGGCACATTTGAGACTGCAGAAGAAGCAGCCAGGGCTTATGATGAAGCTGCTTGCCTTCTTCGAGGATCCAGCACTCGCACCAACTTCATCACCCGTGTCTCCACTGATTCTCCTCTCGCTTCTCGTATTCGAAATCTGCTTAACAACAGAAAAGGAGCCAAAGAGCAAGATGTTGATGCTTCTTCTTCCTCAAGAGTCAACCCTAGTAGCTCTCCTACTAGTACTACTACTAGGATCTCAGACTCAAGCAATGGTGACAAAAATGAAAGTGATCTTTCTAGTGGGAAAATTCAGAACTCAGAGTTATTTGCTGATGGATATAGACCAGATTTGAGCAGTTGTAGGGAGGAATCTAATCTTTCATGGGGTCTTGGACCTTTCATCGATCGTTTTCCTTTTGCTCAGTCTGAAGATGGTTTTGCTGAGACAGTTGAGTTAGAGCTTTCAGAATTTGAGAGGATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGAGTTCATGAGTACATGGAAACTGTCCAGGACTTTAATGAAGAAGAAACTCTTTGGGATCTTCCACCTTTATGGTCAATGTTCTGCTAA	789	0.4208	MEIHFQQPKKFQKASVVPMSRGGGKFKGRNKNNNGTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSSTRTNFITRVSTDSPLASRIRNLLNNRKGAKEQDVDASSSSRVNPSSSPTSTTTRISDSSNGDKNESDLSSGKIQNSELFADGYRPDLSSCREESNLSWGLGPFIDRFPFAQSEDGFAETVELELSEFERMKVERQISASLYAINGVHEYMETVQDFNEEETLWDLPPLWSMFC	262

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele15g1097	262	CDD	AP2	38	94	IPR001471	GO:0003700\|GO:0006355
	Lele15g1097	262	MobiDBLite	consensus disorder prediction	113	160	-	-
	Lele15g1097	262	Gene3D	AP2/ERF domain	37	97	IPR036955	GO:0003700\|GO:0006355
	Lele15g1097	262	Pfam	AP2 domain	38	87	IPR001471	GO:0003700\|GO:0006355
	Lele15g1097	262	ProSiteProfiles	AP2/ERF domain profile.	38	95	IPR001471	GO:0003700\|GO:0006355
	Lele15g1097	262	SUPERFAMILY	DNA-binding domain	38	95	IPR016177	GO:0003677
	Lele15g1097	262	SMART	rav1_2	38	101	IPR001471	GO:0003700\|GO:0006355
	Lele15g1097	262	PRINTS	Ethylene responsive element binding protein signature	61	77	IPR001471	GO:0003700\|GO:0006355
	Lele15g1097	262	PRINTS	Ethylene responsive element binding protein signature	39	50	IPR001471	GO:0003700\|GO:0006355
	Lele15g1097	262	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	31	228	-	-
	Lele15g1097	262	FunFam	ethylene-responsive transcription factor RAP2-11	37	96	-	-
	Lele15g1097	262	MobiDBLite	consensus disorder prediction	124	160	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele15g1097	Lele-ChrLele15	6364470	6365258	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele15g1097	25	262	AP2-EREBP Transcription Factor Family	AT5G19790	42.636	2.17e-50	164

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele15g1097		AP2	5.6e-14	CL0081