Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1094 ATGGAATCGTTCGAAATCCCACGTGGGCCCGGAAATGGGGACGTGGAGTTAGGCTCATATTTACGGACTTCAGGAGAACTGGGTTTGGATACTTTCTTCAAAAAGGTTCAAGAGCTCGATAAACAGTTTGAGAGGCTGGGTAAGCTTCTCAGACAGCTCCAGGATGCTCATGAGGAGTCCAAAGCGGTTACCAAAGCTCCTGCCATGAAGGGTATTAAGCAGAGAATGGAGAAAGATGTTGGTGAAGTTAAGAAAATTGCCCATCACACAAAAACAAGAATTGAAGAATTGGACAGAGAAGTGAGCACATTCTGTGCCTTGAAAAAGAAATTGAAGGACAAGATGGATGAATTTCAGAGGCTTAGGGAAGTCATGCATCAAGAATATCGCGAGGTTGTAGAGAGGCGTGTTTATACAGTGACGGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAGACTGGAGATAGTGAACAGATTTTCCAGAATGCAATTAAGGAACATGGGAGAGGCCAGATATATATGGATTTGGCAGTGTTGGTTGATTCACAGGGAGACATTCTTAACAACATAGAATCCCAGGTATCAAGTGCAGTAGATCATGTACAGCAAGGCAATAATGCATTGGTGAAGGCAAAGAAGGCACAGAAGAGTTCGAGAAAATGGATGTGCATTGCTATTATAATACTTCTTGTCGTCGTCGTCGTGGTTCTTACTTCTGTCCTCAGACCATGGAGTGACAGAAGAGGGGCCTAG 762 0.4383 MESFEIPRGPGNGDVELGSYLRTSGELGLDTFFKKVQELDKQFERLGKLLRQLQDAHEESKAVTKAPAMKGIKQRMEKDVGEVKKIAHHTKTRIEELDREVSTFCALKKKLKDKMDEFQRLREVMHQEYREVVERRVYTVTGTRADEETIDRLIETGDSEQIFQNAIKEHGRGQIYMDLAVLVDSQGDILNNIESQVSSAVDHVQQGNNALVKAKKAQKSSRKWMCIAIIILLVVVVVVLTSVLRPWSDRRGA 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1094 253 SMART SynN_4 24 130 IPR006011 GO:0016020
Lele15g1094 253 Pfam SNARE domain 189 240 IPR000727 -
Lele15g1094 253 FunFam Syntaxin 132 155 245 - -
Lele15g1094 253 Pfam Syntaxin 32 175 IPR006011 GO:0016020
Lele15g1094 253 Coils Coil 36 59 - -
Lele15g1094 253 SMART tSNARE_6 141 214 IPR000727 -
Lele15g1094 253 Coils Coil 94 128 - -
Lele15g1094 253 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 175 214 IPR000727 -
Lele15g1094 253 CDD SNARE_syntaxin1-like 174 213 - -
Lele15g1094 253 PANTHER SYNTAXIN 32 232 IPR045242 -
Lele15g1094 253 Gene3D - 29 137 - -
Lele15g1094 253 SUPERFAMILY t-snare proteins 28 207 IPR010989 GO:0016020|GO:0016192
Lele15g1094 253 Gene3D - 158 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1094 Lele-ChrLele15 6349797 6352266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1094 3 253 SNARE and Associated Proteins AT3G03800 55.518 3.32e-100 293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1349 13 23403541 23410564 Lele15g1094 15 6349797 6352266 hybridization
Lele14g1256 14 21730140 21735397 Lele15g1094 15 6349797 6352266 hybridization