Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1072 ATGGTTTTGTACAATACTTTGTGTTTTGTAATTGCTTCTATTAGGAAAGGTCTTAGGAAGATCAAGATCATGTTGTGGGTAGACAAGTATCGACCCAAAACCCTCGACCAGATTGTTGTCCACGAAGAAGTCGCCCAAAATCTTAAGAAACTGGTGACGGAGCAGGATTTCCCGCATTTGCTATTCTATGGCCCGCCTGGGTCTGGCAAAAAAACCCTAATCATGGCTCTTCTCCGACAAATGTTTGGAAACGGTACCGAGAAGGCGAAGGTGGAAAATAAGACATGGAAAGTGGATGCTGGGAGTAGATCTATTGATATAGAGCTGACAACATTATCAAGTGCCAATCACATTGAACTGAGTCCCAGTGATGCAGGCTTTCAGGACAGATATATTGTTCAAGAAATAATCAAAGACATGGCTAAAAATAGACCACCAATTGATACCAAGGGGAAGAAGGGATTTAAAGTTATAGTGCTCAATGAGGTTGACAAACTCTCTAGAGAAGCCCAGCATTCTTTGCGTAGAACAATGGAAAAATACAGTTCTTCTTGCAGGTTGATTCTATGTTGCAATAGTTCTTCAAGAGTTACAGAAGCAATCCGCTCTCGTTGTCTAAATGTGCGAATAAATGCACCAAGTGAAGAGCAGATAGCTAGAGCATTGGAATTCATTGGTAAGAAAGAAGGCCTGCAACTTCCTCCTGGGTTCGCTGCTCGCATTGCAAAAAAATCAAATCGGAGCCTAAGGCGGGCTATATTGTCTTTTGAAACTTGCCGTGTTCAACAGTATCCTTTCAGTAGCAAGCAAACAATACCGCCAATGGATTGGGAGGAATATATTTCTGAAATTGCATCTGACATAATGAAGGAACAAAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAGTTGTATGAGCTCTTAATCAACTGTATACCTCCTGAGATCATCTTGAAGAGGCTTCTTTACGAACTGTTAAAGAAACTGGACGCAGAATTAAAGCTTGAGGTTTGCCATTGGGCGGCATATTATTTTGTCCAGCCATTTTACAGTACTGTTTCCTCTGATTCTTCTCCCTCATTGGACCAGGAACATAGAATGCGTCTTGGACAGAAGGCCATCTTCCACATCGAAGCATTTGTGGCTAAATTCATGAGCGCTTATAAAGGCTTCCTAATTGCAACATTTGGCTGA 1194 0.4162 MVLYNTLCFVIASIRKGLRKIKIMLWVDKYRPKTLDQIVVHEEVAQNLKKLVTEQDFPHLLFYGPPGSGKKTLIMALLRQMFGNGTEKAKVENKTWKVDAGSRSIDIELTTLSSANHIELSPSDAGFQDRYIVQEIIKDMAKNRPPIDTKGKKGFKVIVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIARALEFIGKKEGLQLPPGFAARIAKKSNRSLRRAILSFETCRVQQYPFSSKQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLKKLDAELKLEVCHWAAYYFVQPFYSTVSSDSSPSLDQEHRMRLGQKAIFHIEAFVAKFMSAYKGFLIATFG 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1072 397 CDD HLD_clamp_RFC 213 281 - -
Lele15g1072 397 Pfam DNA polymerase III, delta subunit 41 212 - -
Lele15g1072 397 Gene3D - 214 273 - -
Lele15g1072 397 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 276 IPR027417 -
Lele15g1072 397 SUPERFAMILY post-AAA+ oligomerization domain-like 275 389 IPR008921 GO:0003677|GO:0006260
Lele15g1072 397 CDD AAA 39 214 - -
Lele15g1072 397 SMART AAA_5 56 216 IPR003593 -
Lele15g1072 397 Gene3D - 276 388 - -
Lele15g1072 397 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 26 344 - -
Lele15g1072 397 Gene3D - 23 213 IPR027417 -
Lele15g1072 397 FunFam Replication factor C subunit 5 23 213 - -
Lele15g1072 397 FunFam replication factor C subunit 3 214 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1072 Lele-ChrLele15 6222627 6227880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1072 24 397 Core DNA Replication Machinery Family AT5G27740 78.877 0.0 628