Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1065 ATGAGTTGGCACCGGCAGAAAAGACACAGTGTCTTGTATTTGAAGCATGGGGATTATGGCATCAGAATTTCATCATCTACGCCACGAATTAAGCCCAGAGTTTTGTTTGCGGCGGTGAGCTCTTGTTGCTTACTCTTAGCACTATCAACAATGGCTGAACGTGGCGGCGGAGATCGTGGCGGCTTTGGCCGTGGCTTTGGTGGTCGTGGAGGACGTGGTGACCGGGGTCGTGGAGGACGCCGCAGGGGCGCTCGTCGGGAAGAGGAGGAAAAATGGGTTCCCGTGACCAAGCTTGGCCGTCTCGTCAAAGAGGGAAAGATCCGTAGCCTCGAGCAGATCTACCTCCATTCTCTTCCAATCAAGGAGTACCAGATCATCGATACCTTGGTTGGTCCCAGCCTGAAGGACGAGGTCATGAAGATCATGCCGGTCCAGAAGCAGACGCGAGCCGGTCAGAGGACCCGGTTCAAAGCGTTCGTTGTTGTTGGTGACGGCAATGGACATGTGGGACTTGGCGTGAAGTGCAGCAAGGAGGTCGCTACGGCCATTCGCGGCGCAATTATTTTGGCTAAGCTCTCGGTCATTCCGGTGAGAAGAGGCTACTGGGGTAACAAGATCGGTAAGCCTCATACAGTTCCGTGCAAGGTTACTGGAAAGTGTGGCTCAGTTACGGTGCGGATGGTTCCTGCCCCTCGTGGTGCTGGAATCGTTGCTGCTAGAGTGCCAAAGAAGGTATTGCAATTTGCAGGAATCGAAGATGTCTTTACTTCTTCACGAGGGTCGACCAAGACGCTCGGGAATTTTGTCAAGGCTACTTTTGATTGTTTGCTGAAAACTTATGGATTCCTAACGCCTGAATTCTGGAGGGAGACCCGCTTCATCAAATCTCCATTCCAAGAGTACACAGATCTATTGACAAAACCAACTGGAAAGGCTCTAATCCTGGAGGAAGAGAGAGTGGACGCTTGA 969 0.5212 MSWHRQKRHSVLYLKHGDYGIRISSSTPRIKPRVLFAAVSSCCLLLALSTMAERGGGDRGGFGRGFGGRGGRGDRGRGGRRRGARREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEYQIIDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFIKSPFQEYTDLLTKPTGKALILEEERVDA 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1065 322 ProSiteProfiles S5 double stranded RNA-binding domain profile. 134 197 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele15g1065 322 Gene3D - 197 289 IPR014721 -
Lele15g1065 322 Pfam Ribosomal protein S5, N-terminal domain 134 198 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele15g1065 322 Gene3D - 91 196 - -
Lele15g1065 322 MobiDBLite consensus disorder prediction 59 89 - -
Lele15g1065 322 PANTHER RIBOSOMAL S SUBUNIT 79 280 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele15g1065 322 TIGRFAM uS5_euk_arch: ribosomal protein uS5 87 293 IPR005711 GO:0003735|GO:0006412|GO:0015935
Lele15g1065 322 ProSitePatterns Ribosomal protein S5 signature. 151 183 IPR018192 -
Lele15g1065 322 Pfam Ribosomal protein S5, C-terminal domain 218 290 IPR005324 GO:0003735|GO:0005840|GO:0006412
Lele15g1065 322 SUPERFAMILY Ribosomal protein S5 domain 2-like 210 290 IPR020568 -
Lele15g1065 322 SUPERFAMILY dsRNA-binding domain-like 130 199 - -
Lele15g1065 322 FunFam 40S ribosomal protein S2 91 196 - -
Lele15g1065 322 FunFam 40S ribosomal protein S2 197 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1065 Lele-ChrLele15 6175672 6179617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1065 88 310 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 91.031 9.38e-151 422