Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1040 ATGGGGAGGAAGCGAAAGCTAACGCCAAAACCTGCTGAATCCGTTGAACCCCCATTGAAGCAACAGCATCAACAACTTGAGCAGCAGCAATATGAGCCAGAAGCGGACCAAACTGTTGAAGACCAAGATAATGGAGCCGATTACGAAGAAGTTGAAGTGGAAGAGGAGGAGGAGGAGGAGGATGAGGTAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGAACAAGAACCAGGAGAAGGATCCGGAGACGATAACGCTAATCCCGATGACGCTCAAGATGCGAATGATCAGGCATCTAAGGCTCAGACAACATCAGCGGCTGCAACATCAGTAACCGGTCAATATGGAAAGGACGACGACGGCGAAGAGCCGATACAAAAGCTTCTCGAACCGTTCAGCAAGGAACAAATTTTAAATCTTCTGTGCGAAGCGGCGAATAACCATCACGATGTAGCAGATCGGGTCCGAAAGGTGGCTGACGAGGACCCCGCTCATCGAAAAATCTTCGTGCACGGCCTCGGATGGGACACAAACGCTGATACCCTCATCAACGTTTTCAAGCAGTACGGTGAGATTGAAGATTGCAAGGCGGTATGTGACAAGGTATCCGGTAAATCCAAGGGCTATGGCTTCATCCTCTTTAAATCGCGTCGTGGAGCTCGCAATGCGCTGAAGCAACCGCAGAAGAAGATCGGGAACCGAATGACGGCCTGCCAGCTTGCCTCGGTTGGTCCGGTTCAACAGCCGGTCGCTCCACAATCAACCCCAGCACAACAAGCATCAGAGTATACCCAAAGGAAGATTTACGTCAGCAATGTTGGGGCCGATTTGGAGCCTCAGAAATTGCATGTGTTTTTTTCGAAGTTTGGGGAGATCGAGGAAGGACCATTAGGGCTTGATAAGCTGACTGGGAAACCAAAAGGGTTCTGCTTGTTTGTGTACAAGAGCGTTGAGAGTGCCAGAAAGGCTCTTGAAGAGCCTCACAAGGAATTTGAGGGCCATATTTTGCACTGTCAGAAGGCAATAGATGGCCCGAAGCCGGGAAAGCCTCAATTTCAGCAACATCAGAATCCTCAGAGAACCCAATTCCAGAGAAATGAGACCACAACATATGTGGGTGGGGCTGCTACCGGACAAGGGCACCTGATGGCGCCAGCGGGACCTGGTATTGGATTTAACCCGCAGGCGGCGGCTGCACAGACACTAAACCCAGCTCTTGGGCAGGCACTGACAGCACTACTTGCAACTCAAGGGGCTGGCTTGGGGCTGACCAATTTATTGGGAACTCTGGGATCAGCTGGGTGGTTACAGTAA 1320 0.5106 MGRKRKLTPKPAESVEPPLKQQHQQLEQQQYEPEADQTVEDQDNGADYEEVEVEEEEEEEDEVEEEEEEEEEEEEEQEPGEGSGDDNANPDDAQDANDQASKAQTTSAAATSVTGQYGKDDDGEEPIQKLLEPFSKEQILNLLCEAANNHHDVADRVRKVADEDPAHRKIFVHGLGWDTNADTLINVFKQYGEIEDCKAVCDKVSGKSKGYGFILFKSRRGARNALKQPQKKIGNRMTACQLASVGPVQQPVAPQSTPAQQASEYTQRKIYVSNVGADLEPQKLHVFFSKFGEIEEGPLGLDKLTGKPKGFCLFVYKSVESARKALEEPHKEFEGHILHCQKAIDGPKPGKPQFQQHQNPQRTQFQRNETTTYVGGAATGQGHLMAPAGPGIGFNPQAAAAQTLNPALGQALTALLATQGAGLGLTNLLGTLGSAGWLQ 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1040 439 MobiDBLite consensus disorder prediction 18 33 - -
Lele15g1040 439 SUPERFAMILY RNA-binding domain, RBD 160 251 IPR035979 GO:0003676
Lele15g1040 439 Coils Coil 46 78 - -
Lele15g1040 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 245 IPR000504 GO:0003723
Lele15g1040 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 338 IPR000504 GO:0003723
Lele15g1040 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 236 IPR000504 GO:0003723
Lele15g1040 439 MobiDBLite consensus disorder prediction 93 114 - -
Lele15g1040 439 SUPERFAMILY RNA-binding domain, RBD 250 364 IPR035979 GO:0003676
Lele15g1040 439 SMART rrm1_1 169 241 IPR000504 GO:0003723
Lele15g1040 439 SMART rrm1_1 269 341 IPR000504 GO:0003723
Lele15g1040 439 MobiDBLite consensus disorder prediction 1 125 - -
Lele15g1040 439 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 54 345 - -
Lele15g1040 439 Gene3D - 252 382 IPR012677 -
Lele15g1040 439 MobiDBLite consensus disorder prediction 345 364 - -
Lele15g1040 439 CDD RRM_RBM24_RBM38_like 168 243 - -
Lele15g1040 439 Gene3D - 145 251 IPR012677 -
Lele15g1040 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 344 IPR000504 GO:0003723
Lele15g1040 439 MobiDBLite consensus disorder prediction 34 82 - -
Lele15g1040 439 CDD RRM_RBM24_RBM38_like 268 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1040 Lele-ChrLele15 6052199 6053562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1040 267 433 C2H2 Transcription Factor Family AT2G19380 29.744 4.60e-12 66.2