Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1008 ATGAGGGAGGACGACTCGAATTGGTTCTCGAGATGGGAAGAGGGACTTCCTTCCCCAGACGAACTCATGCCTCTCTCCCAAACCCTAATCACGCCTGATCTTGCCATGGCTTTCGACATCCGAAACCCCCACAGTAATAGCCCTCACCATCAAATCCCTCAACCCCCGCCTCTTTCGAATCCCTTACCTTCTCCCGGAAATCCCACACAACCCAACTCTGCTGAATTTGCCGATTCCGCCGAGCTGGGTTCTGGAACAGCCGGTGAAGAGCCCGCACGCACCCTCAAGCGCCCTCGCCTCGTCTGGACTCCACAACTTCACAAACGGTTCGTGGATGCCGTCGCCCACTTGGGTATCAAAAATGCTGTGCCAAAAACCATAATGCAGCTGATGACTGTGGACGGGTTGACCAGGGAAAACGTGGCCAGTCATTTGCAAAAATATCGACTTTATTTGAAGCGCATGCAGGGACTATCCGCCGGTGGCGCCGGCAGCGGTGGCGGAGCTGGGTTGGTTGCCTCGTCCGATCCTGCCACTGATCATCTATTTGCAAGCGCCCCCGTGCCGCCCCATTTCTTACATCCTGCAGCTAGGTCCAATTCCGACCATTTCTTGCCGTTCGTGCCGGTTCCGGCGTCTCTGCAGCATCACCATCACCACCAACAGCATATGGCAGCGGCTGTGGCCGCCGCCCATCCCCAATTGCAGCAGCAGTATCACAGACAAGTGGGGCATTTTGGATCGCCGCCGAATGGGGGCTTCGAGCATACGTTTCTGACAAGGCAACCGCTTCATAGGATGGGTCAAGCAATGCAGCACAGTCCAGTACCTGGATATGTAGAGGACATGGAATCGGCTAACGCAGCTGGAGGGAGAAAGGTTCTTACTTTATTTCCCACCGGAGATGATTGA 912 0.5537 MREDDSNWFSRWEEGLPSPDELMPLSQTLITPDLAMAFDIRNPHSNSPHHQIPQPPPLSNPLPSPGNPTQPNSAEFADSAELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMTVDGLTRENVASHLQKYRLYLKRMQGLSAGGAGSGGGAGLVASSDPATDHLFASAPVPPHFLHPAARSNSDHFLPFVPVPASLQHHHHHQQHMAAAVAAAHPQLQQQYHRQVGHFGSPPNGGFEHTFLTRQPLHRMGQAMQHSPVPGYVEDMESANAAGGRKVLTLFPTGDD 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1008 303 MobiDBLite consensus disorder prediction 1 23 - -
Lele15g1008 303 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
Lele15g1008 303 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 271 IPR044841 GO:0003700|GO:0006355
Lele15g1008 303 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Lele15g1008 303 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Lele15g1008 303 Gene3D - 94 156 - -
Lele15g1008 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Lele15g1008 303 MobiDBLite consensus disorder prediction 39 96 - -
Lele15g1008 303 FunFam Two-component response regulator 93 156 - -
Lele15g1008 303 MobiDBLite consensus disorder prediction 49 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1008 Lele-ChrLele15 5881589 5882500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1008 1 303 G2-like Transcription Factor Family AT3G10760 60.000 4.28e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele15g1008 Myb_DNA-binding 2.6e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1340 14 22201236 22202165 Lele15g1008 15 5881589 5882500 hybridization