Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g1001 ATGGCTGTGAAAGATAAGAAGGCTAAGAGTGAGTCTAAGACTTTAGATGATATTTTTAAGTTGGTTGATGAGAATGTTAGCGAAAAGGGTTCATTGGAAGCTTTGGAGCCTCCTCGAAGTGTCATCAAGTCTAATCTTTTCCTACATCAAAGGAAGGATTGTGGTGATGATATGGGATTAGGCAAGACCTTAACTTTACTTTCTTTGATTGCTCTTGATAAGGATTCTATTGCTTTAAATATGGAAGAAGGAAAGCATGCTGAAATGGGGGAGCATGATGAAGGATTCGCTGTCTCAAGTGGTAAGAAGGATGTCACACCTTCAACTGGCTTGGGTATAAAGACTACATTGGTTGTGTGCCCCGCTTCTGTAATTTCAACATGGATAACACAGTTAGAAGAACATACTAAACCAGGCACATTGAAGACGTACGTATATTATGGTGATAAAAGGACCAAGGATGCTGAAGAACTTAAGATTTATTGGCGGAGCTTAGTGCAACTTCCTCTTGCTGGAAGAAACCCAAACGGACTCTTACGTCTTCAGGTTTTGATGGCAACAATTTCATTGCGAAGAACAAAAGATAAAGCATTGGTTGAATTGCCTCCAAAAACTGTAGAGACTTGTTTCGTTGAACTTCTTGAGGAAGAACTGAAACTTGGTAAACTTGGTATGATCAGATAG 684 0.3947 MAVKDKKAKSESKTLDDIFKLVDENVSEKGSLEALEPPRSVIKSNLFLHQRKDCGDDMGLGKTLTLLSLIALDKDSIALNMEEGKHAEMGEHDEGFAVSSGKKDVTPSTGLGIKTTLVVCPASVISTWITQLEEHTKPGTLKTYVYYGDKRTKDAEELKIYWRSLVQLPLAGRNPNGLLRLQVLMATISLRRTKDKALVELPPKTVETCFVELLEEELKLGKLGMIR 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g1001 227 Pfam SNF2-related domain 55 153 IPR000330 GO:0005524|GO:0140658
Lele15g1001 227 Gene3D - 42 206 IPR038718 -
Lele15g1001 227 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 11 159 - -
Lele15g1001 227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 159 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g1001 Lele-ChrLele15 5835661 5837005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g1001 158 220 RAD5 or RAD16-like Gene Family AT5G05130 68.254 9.36e-21 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele15g1001 SNF2_N 1.3e-15 CL0023