Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0969 ATGTCCCTCGAAGATTCTCTAAGATCTCTCTCCCTCGACTACCTCAACCTCCTCATCAACGGCCAGGCCTTCAGTGACGTCACCTTCAGCGTCGAGGGTCGTCTCGTCCACGCTCACCGATGCATCCTCGCTGCTCGAAGCCTCTTCTTCAGGAAATTCTTCTGTGCACCGGACTCTCCGTCGGGGCTAGACCCGGCCGGCTCTCGGGTCAACTCCGCTGCCTCCGGCCCAAGGCCTGGGATCATTCCTGTTAACTCCGTCGGGTACGAAGTCTTCCTGTTGGTTCTTCAGTTCCTGTACAGCGGCCAGGTGTCTATTTTGCCTCAGAAGCACGAGCCGCGGCCTAATTGTGGCGAGCGAGGATGTTGGCACACGCATTGCACCTCCGCCGTTGATCTTGCTCTCGAGACTCTTGCCGCCGCTAGATCTTTTGGGGTCGAACAGCTTGCATTTCTCACCCAGAAACAGTTAGCGAGCATGGTAGAGAAGGCGTCCATTGAAGATGTAATGAAAGTACTGGTAGCATCAAGAAAGCAAGACATGCACCAGCTGTGGGCCACTTGCTCCCACCTGGTTGCCAAGTCAGGTCTCCCGCCTGAAGTTCTCGCCAAACACCTTCCCATCGACGTCGTTGCTAAGATTGAAGAGATTCGTCTCAAGTGCTCCTTTAATCGCCGCTCTCTATTGCCCTATCACCACCCCGGCATCCGCGAGGCCGACCTAGATGACCAGAAAATCCGGCGAATGAAAAGAGCACTGGACGCCTCCGATGTGGAGCTTGTTAAGCTCATGGTAATGGGGGAAGGCTTAAATCTAGACGAAGCGCTGGCCTTGCACTACGCCGTAGAGAATTGTAGCCGAGAAGTGGTGAAAGCATTGCTGGAGCTCGGGGCGGCCGATGTCAACTACCCAGCCGGGCCTGCCGGGAAAACTCCGCTTCACATTGCATCGGAGATGGTATCACCGGACATGGTGGCAGTGCTCTTGGACCACCACGCTGATCCGAATGTCCGGACCGTCAATGGCGTGACCCCACTTGACATCCTCAGAACCCTAACTTCAGACTTCCTGTTCAAAGGTGCCGTACCTGGGTTAACCCACATCGAACCCAACAAGCTGAGACTGTGCTTGGAACTGGTTCAATCGGCGGCGCTCGTGATTTCTCGCGAAGAAGGAAATGCGAATCCTCCCACATCAACGGCCATATATCCGCCACTGAGTGAGGATCATAGCAGTGGGAGCAGCAGCACCCTAAACCTGGACTCTAGGTTGGTTTATCTGAATCTGGGTGCGGCGGTTTCGGGTCAAATGGTTTCCAGATTGGACGGCGATGACGATGGCCACAGGGATCCCATGAACCGTCATGGCTCGCAAGGAGGTGGATGTGACCCAACAATGTACCACCACCATCCTCACTCTCATGATTTCTAG 1431 0.5507 MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCAPDSPSGLDPAGSRVNSAASGPRPGIIPVNSVGYEVFLLVLQFLYSGQVSILPQKHEPRPNCGERGCWHTHCTSAVDLALETLAAARSFGVEQLAFLTQKQLASMVEKASIEDVMKVLVASRKQDMHQLWATCSHLVAKSGLPPEVLAKHLPIDVVAKIEEIRLKCSFNRRSLLPYHHPGIREADLDDQKIRRMKRALDASDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIASEMVSPDMVAVLLDHHADPNVRTVNGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVISREEGNANPPTSTAIYPPLSEDHSSGSSSTLNLDSRLVYLNLGAAVSGQMVSRLDGDDDGHRDPMNRHGSQGGGCDPTMYHHHPHSHDF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0969 476 FunFam regulatory protein NPR5 isoform X2 239 356 - -
Lele15g0969 476 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 470 IPR044284 GO:0099402
Lele15g0969 476 ProSiteProfiles Ankyrin repeat region circular profile. 308 338 - -
Lele15g0969 476 ProSiteProfiles Ankyrin repeat profile. 308 340 IPR002110 GO:0005515
Lele15g0969 476 Pfam Domain of unknown function (DUF3420) 196 249 IPR024228 -
Lele15g0969 476 Gene3D Potassium Channel Kv1.1; Chain A 4 194 IPR011333 -
Lele15g0969 476 SUPERFAMILY POZ domain 8 159 IPR011333 -
Lele15g0969 476 FunFam regulatory protein NPR5 isoform X1 4 194 - -
Lele15g0969 476 CDD BTB_POZ_NPR_plant 8 161 - -
Lele15g0969 476 Gene3D - 241 356 IPR036770 -
Lele15g0969 476 MobiDBLite consensus disorder prediction 391 415 - -
Lele15g0969 476 Pfam Ankyrin repeats (3 copies) 257 338 IPR002110 GO:0005515
Lele15g0969 476 MobiDBLite consensus disorder prediction 440 476 - -
Lele15g0969 476 ProSiteProfiles BTB domain profile. 25 108 IPR000210 GO:0005515
Lele15g0969 476 SMART ANK_2a 273 303 IPR002110 GO:0005515
Lele15g0969 476 SMART ANK_2a 308 337 IPR002110 GO:0005515
Lele15g0969 476 MobiDBLite consensus disorder prediction 392 415 - -
Lele15g0969 476 Pfam BTB/POZ domain 16 107 IPR000210 GO:0005515
Lele15g0969 476 SUPERFAMILY Ankyrin repeat 267 351 IPR036770 -
Lele15g0969 476 SMART BTB_4 25 161 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0969 Lele-ChrLele15 5659467 5661752 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele15g0969 BTB 6e-13 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0805 05 4832373 4834670 Lele15g0969 15 5659467 5661752 CCT
Lele13g1457 13 24067931 24070228 Lele15g0969 15 5659467 5661752 hybridization
Lele14g1382 14 22465867 22468163 Lele15g0969 15 5659467 5661752 hybridization