Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0952 ATGGCGTTCAGAGGGAAGGAGATGATGAAGAAAGTTCTCAAGAAAGTGGGAGAGCACAATTTGGCTCCTGGAGTGAAGGAATCTTTGGAAAAATGCATGCCCAGAAGCAAGGTCGTCATGGGTCGCTCAAAACGCGGTATCTATGCCGGACGACACATCCAGTTTGGCAATCGCGTCAGTGAAGATGGCGGTAACAAGACAAGGAGAACTTGGAAACCTAATGTTCAAGAGAAACGGCTCTTCAGTTATATCATGGACCGCCACATTCGTGTTAAGGTTACCACACACGCGCTTCGTTGCATCGACAAGGCAGGTGGGGTTGATGAATACTTCCTGAAGACTCCATATCACAAGTTGGACACAGAACTTGGCCTCTTTTGGAAAGCCAAGATAGAGAAGCTGTATGAGGAACTTGGGAAGATGGAGGTTGTATTCTTTTCGCCAGAGGATGAACAGAAGTTTGAACAGGGTTTTAAAGAATTGAAACTGTCTGAAAGGGAAGCACGGAGGGAATTCCGAAGGAAAATGTATACTGGGATGGACAAACACAAGCAGATTGAGCTAGAACATAAAGATGAACAATCTACTGATAAAGGAGGTGGTGGAATCGAGGAAGGAATATCCCACGAATCTAAACAACAGTTGGCTGCGGTTTCATACGGACTAGCTGCCGACCATCTCGAAGCTGGAAGTTTAATGCTGAAACCTGTGGGAGATGACGTTAATTGCGCCTGCATTAGTTTGATTTCAAGTTTAAAAAGTTTTCATTTGTTGGTTTATTGGTCAGGCCTTATGGAAGTCGAGGAGGAACAGACTACGTCACCTGTTTCTGCAGAAACCTCTGTACCATCATCTGATGCTCAAAGCATGGTTTCTCCTGTTCCTGCTGTGCTGCCCCCGTCAATGCAACCTGTAATTCCAACAGTCGTTCCACCATCTAGTGTGCCCCCTATTGCTCCAATTCCTTCAATTCCTCCTCCCACTACTCTCCGCCCACTGGCACCGCTTCCTGTTCGTCCACCATCTATTAGGCCACCCATGTCGCAAAATGGTGAGTCTAGATCAACAGACTCTGATTCAGATCATGATGACTCAGCCCCTGGGATAAACAAGGGTACAGGGGAGTATGAGATATCAGAAGAGAGTAGACTGGTAAGAGAGAGGCAGGAAAAGGCAATGCAGGAACTTATGATGAAGAGGCGTGCTGCTGCTCTGGCTGTTCCAACAAATGACATGGCTGTGCGAGCTCGTCTCCGGCGCCTTGGTGAACCCATCACCCTTTTTGGTGAAAGGGAGATGGAGAGAAGGGACAGGTTGCGGATGATTATGGCAAAGTTGGATGCTGAAGGTCAACTGGTAAAGCTGATGGAAGCTCATGAAGATGAAGAGGCTGTTGCTTATGCTGCAAAAGAAGAGGCTGAGGAAGACCTACAGTATCCCTTTTACACTGAAGGGTCAAAGGCCCTCCTGGATGCCAGAGTTGATATTGCTAAGTTTTCTTTAGTACGAGCAGCAACACGTCTTAATCGTGCTCGAAGAAGAAGAGATGATCCAGATGAAGATATAGATGCTGAAATAGATTGGGCACTGAAGCAGGCAGAGAACTTGGTTCTTGATTGTAGTGAGATTGGAGATGATCGGCCACTTTCTGGTTGCTCCTTCTCAGCAGATGGAAAATGCCTTGCTACCTGTTCTCTGACTGGAGCTGTGAAACTTTGGAGCATGCCTGAAGTTAAAAAAATTTCTACCTTGAAGGGGCACACAGAGCGTGCTACTGATGTTGCTTACTCTCCTGTGCATAACCATTTAGCAACTGCCTCTGCTGACCGCACTGCAAGGTATTGGAATGATCAAGGGTCTCTTTTAAAGACATTTGAGGGTCATCTTGACCGTCTTGCTCGCATTTCCTTCCATCCATCTGGGAAGTACTTGGGCACTGCTAGCTTTGACAAGACATGGAGATTGTGGGACATAGAAACAGGCGAGGAGTTGCTTCTCCAAGAAGGTCATAGTAGGAGTGTATATGGCTTAGCTTTCCACCATGATGGATCATTAGCTGCATCTTGTGGACTGGATTCACTTGCTCGAGTTTGGGACCTTCGTACTGGGAGAAGTATTCTTGCACTAGAAGGTCATGTCAAACCGGTTCTTGGCGTCAGTTTTTCACCTAATGGTTATCATTTAGCCACAGGTGGTGAAGACAACACCTGTCGCATTTGGGATTTGAGAAAGAAAAAATCCTTGTACATCATTCCAGCTCACTCTAATTTAATATCACAAGTCAAATTTGAGCCACAAGAGGGTTATTTTTTGGTAACAGCTTCGTATGATATGACAGCTAAGGTATGGTCAGCTCGTGATTTTAAGCCTGTCAAAACGTTATCTGGGCATGAAGCAAAAGTTACTTCTCTAGATGTTCTTGGAGATGGACGGTATATTGCTACTGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCAACATGGCTAGCGAACAAGGTATGGATGTTGACTGA 2517 0.4593 MAFRGKEMMKKVLKKVGEHNLAPGVKESLEKCMPRSKVVMGRSKRGIYAGRHIQFGNRVSEDGGNKTRRTWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGVDEYFLKTPYHKLDTELGLFWKAKIEKLYEELGKMEVVFFSPEDEQKFEQGFKELKLSEREARREFRRKMYTGMDKHKQIELEHKDEQSTDKGGGGIEEGISHESKQQLAAVSYGLAADHLEAGSLMLKPVGDDVNCACISLISSLKSFHLLVYWSGLMEVEEEQTTSPVSAETSVPSSDAQSMVSPVPAVLPPSMQPVIPTVVPPSSVPPIAPIPSIPPPTTLRPLAPLPVRPPSIRPPMSQNGESRSTDSDSDHDDSAPGINKGTGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLVKLMEAHEDEEAVAYAAKEEAEEDLQYPFYTEGSKALLDARVDIAKFSLVRAATRLNRARRRRDDPDEDIDAEIDWALKQAENLVLDCSEIGDDRPLSGCSFSADGKCLATCSLTGAVKLWSMPEVKKISTLKGHTERATDVAYSPVHNHLATASADRTARYWNDQGSLLKTFEGHLDRLARISFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSLDVLGDGRYIATVSHDRTIKLWSSNMASEQGMDVD 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0952 838 Pfam WD domain, G-beta repeat 580 616 IPR001680 GO:0005515
Lele15g0952 838 Pfam WD domain, G-beta repeat 619 657 IPR001680 GO:0005515
Lele15g0952 838 Pfam WD domain, G-beta repeat 668 699 IPR001680 GO:0005515
Lele15g0952 838 Pfam WD domain, G-beta repeat 789 826 IPR001680 GO:0005515
Lele15g0952 838 Pfam WD domain, G-beta repeat 707 741 IPR001680 GO:0005515
Lele15g0952 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 584 616 - -
Lele15g0952 838 PANTHER WD40 REPEAT PROTEIN 356 827 - -
Lele15g0952 838 Pfam pre-mRNA processing factor 4 (PRP4) like 414 440 IPR014906 -
Lele15g0952 838 SUPERFAMILY WD40 repeat-like 541 825 IPR036322 GO:0005515
Lele15g0952 838 ProSitePatterns Trp-Asp (WD) repeats signature. 728 742 IPR019775 -
Lele15g0952 838 Gene3D - 709 836 IPR015943 GO:0005515
Lele15g0952 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 751 793 IPR001680 GO:0005515
Lele15g0952 838 Gene3D Ribosomal protein L28/L24 47 117 IPR037147 GO:0003735
Lele15g0952 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 751 784 - -
Lele15g0952 838 Pfam Ribosomal L28 family 45 104 IPR026569 GO:0003735
Lele15g0952 838 MobiDBLite consensus disorder prediction 322 384 - -
Lele15g0952 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 708 IPR001680 GO:0005515
Lele15g0952 838 FunFam 54S ribosomal protein L24 47 118 - -
Lele15g0952 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 667 704 - -
Lele15g0952 838 MobiDBLite consensus disorder prediction 322 344 - -
Lele15g0952 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 625 666 IPR001680 GO:0005515
Lele15g0952 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 709 743 - -
Lele15g0952 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 616 IPR001680 GO:0005515
Lele15g0952 838 SMART pr04_2 409 462 IPR014906 -
Lele15g0952 838 Coils Coil 456 476 - -
Lele15g0952 838 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 752 828 - -
Lele15g0952 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 709 750 IPR001680 GO:0005515
Lele15g0952 838 SMART WD40_4 660 699 IPR001680 GO:0005515
Lele15g0952 838 SMART WD40_4 787 826 IPR001680 GO:0005515
Lele15g0952 838 SMART WD40_4 744 784 IPR001680 GO:0005515
Lele15g0952 838 SMART WD40_4 702 741 IPR001680 GO:0005515
Lele15g0952 838 SMART WD40_4 618 657 IPR001680 GO:0005515
Lele15g0952 838 SMART WD40_4 533 574 IPR001680 GO:0005515
Lele15g0952 838 SMART WD40_4 577 616 IPR001680 GO:0005515
Lele15g0952 838 Gene3D - 524 708 IPR015943 GO:0005515
Lele15g0952 838 SUPERFAMILY L28p-like 43 119 IPR034704 -
Lele15g0952 838 Gene3D - 385 452 IPR036285 -
Lele15g0952 838 SUPERFAMILY PRP4-like 392 447 IPR036285 -
Lele15g0952 838 MobiDBLite consensus disorder prediction 187 205 - -
Lele15g0952 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 794 826 IPR001680 GO:0005515
Lele15g0952 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 794 826 - -
Lele15g0952 838 ProSitePatterns Trp-Asp (WD) repeats signature. 686 700 IPR019775 -
Lele15g0952 838 MobiDBLite consensus disorder prediction 187 208 - -
Lele15g0952 838 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 524 708 - -
Lele15g0952 838 ProSitePatterns Trp-Asp (WD) repeats signature. 644 658 IPR019775 -
Lele15g0952 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 625 662 - -
Lele15g0952 838 Hamap 50S ribosomal protein L28 [rpmB]. 42 110 IPR001383 GO:0003735|GO:0005840|GO:0006412
Lele15g0952 838 PRINTS G protein beta WD-40 repeat signature 603 617 IPR020472 -
Lele15g0952 838 PRINTS G protein beta WD-40 repeat signature 644 658 IPR020472 -
Lele15g0952 838 PRINTS G protein beta WD-40 repeat signature 728 742 IPR020472 -
Lele15g0952 838 CDD WD40 548 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0952 Lele-ChrLele15 5543393 5550662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0952 629 825 U-box Gene Family AT2G33340 23.982 1.63e-11 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1474 13 24174241 24181335 Lele15g0952 15 5543393 5550662 hybridization
Lele14g1401 14 22558628 22566204 Lele15g0952 15 5543393 5550662 hybridization