Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0920 ATGCAAACATTTACTCACGTGTCCTATGTATTGGGTATTAATGAAATGATTTTGGTTGTAGCAGTGGAGATTAAGAATGTGTTATACCAGAACATAAAAGGTTCGAGTGCTTCAAAAGTAAGCGTGGAGTTTGATTGCAGCAAGAGCTTTCCATGCGAGGGGATTGTGATGCAGAACGTAAACTTGACACTCGAAACAGGGGAAGCTTCAAAAGCTTCATGCGACAATGTTCAAGTGTCCTGCATTGGACAACGCTCTATCACACTTTTAACTATGGCCGACCGTGGTGGAGACCGTGGTGGTTTTGGCCGTGGATTTGGTGGCCGTGGTGGACGCGGTGACCGAGGTCGTGGAGGCCGCCGCAGAGGCGCTGGCCGCCGCGAAGAGGAGGAGAAGTGGGTTCCTGTGACCAAGTTGGGTCGTCTTGTCAAGGAGGGGAAGATTCGCAGCCTTGAGCAAATCTACCTCCATTCTCTACCAATCAAGGAACACCAGATCGTCGATACCCTGGTTGGTCCTAGTCTCAAGGACGAGGTCATGAAAATCATGCCAGTCCAGAAGCAGACCCGGGCCGGTCAAAGGACCCGATTCAAGGCCTTCGTCGTCGTTGGTGACGGCAACGGGCATGTGGGACTAGGTGTGAAGTGTAGCAAGGAGGTCGCCACCGCCATTCGTGGTTCTATTATATTGGCGAAGCTTTCGGTGATTCCGGTAAGAAGAGGTTATTGGGGTAACAAGATCGGGAAGCCTCACACAGTCCCCTGCAAGGTTACCGGAAAATGTGGTTCCGTCACTGTGCGTATGGTGCCTGCCCCTCGTGGTGCTGGAATCGTTGCTGCTAGGGTGCCAAAGAAGGTTTTACAGTTTGCAGGAATAGAGGATGTGTTCACCTCTTCTAGAGGGTCGACTAAGACCCTTGGAAATTTCGTCAAGGCAACTTTTGATTGTTTACTGAAAACATACGGGTTCCTGACACCTGAGTTCTGGAGGGAGACGCGCTTCACTAAATCTCCATTCCAAGAGTACACCGATCTATTGGTGAAGCCAACAGGAAAGGCCCTAATCCTGGAGGATGAAAACAGGGTAGAAGCTTGA 1095 0.5041 MQTFTHVSYVLGINEMILVVAVEIKNVLYQNIKGSSASKVSVEFDCSKSFPCEGIVMQNVNLTLETGEASKASCDNVQVSCIGQRSITLLTMADRGGDRGGFGRGFGGRGGRGDRGRGGRRRGAGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIVDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEYTDLLVKPTGKALILEDENRVEA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0920 364 Gene3D - 132 237 - -
Lele15g0920 364 FunFam 40S ribosomal protein S2 238 331 - -
Lele15g0920 364 TIGRFAM uS5_euk_arch: ribosomal protein uS5 128 335 IPR005711 GO:0003735|GO:0006412|GO:0015935
Lele15g0920 364 Pfam Ribosomal protein S5, N-terminal domain 175 239 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele15g0920 364 FunFam 40S ribosomal protein S2 132 237 - -
Lele15g0920 364 SUPERFAMILY dsRNA-binding domain-like 171 240 - -
Lele15g0920 364 PANTHER RIBOSOMAL S SUBUNIT 123 321 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele15g0920 364 Gene3D - 238 330 IPR014721 -
Lele15g0920 364 SUPERFAMILY Ribosomal protein S5 domain 2-like 251 331 IPR020568 -
Lele15g0920 364 ProSiteProfiles S5 double stranded RNA-binding domain profile. 175 238 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele15g0920 364 ProSitePatterns Ribosomal protein S5 signature. 192 224 IPR018192 -
Lele15g0920 364 Pfam Glycosyl hydrolases family 28 21 81 IPR000743 GO:0004650|GO:0005975
Lele15g0920 364 MobiDBLite consensus disorder prediction 110 129 - -
Lele15g0920 364 Pfam Ribosomal protein S5, C-terminal domain 259 331 IPR005324 GO:0003735|GO:0005840|GO:0006412
Lele15g0920 364 MobiDBLite consensus disorder prediction 101 129 - -
Lele15g0920 364 Gene3D - 14 94 IPR012334 -
Lele15g0920 364 SUPERFAMILY Pectin lyase-like 21 83 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0920 Lele-ChrLele15 5363764 5366212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0920 129 351 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 89.686 1.49e-150 424