Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0912 ATGAATCACTTGACAGTGGAAATTGAAGATAGTTTTGCAAGCTTGCTTGACCTGGCAGCCAATAATGACGTTGAGCATTTCAAAAGATCAATTGAACGTGATCCTTCCTCTGTAGATGAGGTTGGACTGTGGTATGGTCGCCAGAAGGGGTCAAAGCAGATGGTCAACGAGCACCGAACGCCTTTGATGGTTGCTGCTACTTATGGTAGCACTGATGTCATCAAGTTAATTCTTTCATTATCTGATGCAGATATTAATCGGTCATGTGGGCTTGACAAAAGCACGGCCCTTCATTGTGCGTCATCAGGTGGGGCTGTAAATGCTGTTGATGTGGTGAAACTGCTTCTGGCAGCTGGTGCTGATCCAAATTCTGTCGATGCCAACGGTCACTATCCTGTTGATGTTATTGTGGTACCTCCCAAGCTTGCACATGTGAGAAGTTTTCTTGAAGAACTTCTTCAAACAGATTGTTCCATGGCAGGGTGTGGTCTTAGGGTGGTAACGGCTACAACAAATTCAAACTCTCCCCCTCCATCAACTTCTCCTGAGAGTGGGTCTCCTTCTACACTAGATTTCCTTTTGAAGCTGAAGTTAAATGACGCTAACACTTTATCTGCATCAGAGAAGAAAGAATATCCTGTTGATCCATCTCTTCCCGACATCAAAAACAGCATCTACTCCACTGATGAGTTCAGGATGTATTCTTTCAAGGTTCGACCATGTTCACGTGCATATTCACATGATTGGACTGAATGTCCCTTTGTCCACCCAGGGGAAAATGCTCGGAGAAGGGACCCGAGGAAGTTTCATTATAGCTGTGTCCCTTGTCCTGATTTTCGGAAAGGAGCTTGCCGTCGAGGAGATATGTGTGAATATGCTCATGGTGTTTTTGAGTGCTGGCTGCATCCAGCTCAATATCGGACCCGCCTCTGCAAGGATGGGACCAGTTGCTCAAGAAGGGTTTGCTTCTTTGCCCATACAGTTGAAGAACTTAGGCCGTTGTATGTTTCAACTGGTTCTGCAGTTCCATCACCACGCTCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCCTGTTACCTGGCTCCCCTTCTTCAATGTCTGTCATGTCTCCTTCGCCGTTCACTCCACCTATGTCACCGTCTGCCACTGGCATGTCACACTCGCCTGTTGCTTGGCCTCAGCCTAATGTTCCAAACCTGCATCTGCCGGGAAGTAATATTCACTCCAGTCGTTTGAGATCTTCATTCAATGCTAGAGATATCCCCGTGGAAGACTTTGATTTGTTGCCCGATTATGATGTTCAGCAACACCAGCTACTTAATGAGATGCCTTGCCTTTCCCAGCAGTCTATGAATTCTAATCACCTAAACCGCTCTGGTCGTATGAAGACTCTGACCCCTTCAAATCTTGATGATCTCTTTTCTGCCGAGAGTTCTTCCCCTCGGTTTGCTGATCCAACATTGAGTTCAGCCGTCTTTTCACCCACACACAAATCGGCCGTCCTTCATCAATTTCAGCAGCAGCAAAGCCTTCTTTCACCTGTGAATACAAATTTTTCTTCCAAGAATGTCGAACATCCTTTTTTACAGGCCTCATTCCAAACGTCAGGAAGGATGTCTCCACGTAACGTGGAACCTATCTCACCAATGGGCTCTAGGCTTTCTGTGCTAGCTCAACGTGAAAAGCAGCAGCAGCAGTTTCGTAGCCTTAGCTCTCGGGATCTTGGCTCCAACTCTGCCGCTGCCATTGCTGCTGCCGGCGGTTTCAATGACAATTCTTGGTCAGAATGGGGATCCACCAACGGTAAATTGGATTGGGCTGTCAATACTGATGAATTGAGCAAGCACCGCAGATCCTCGTCGTTCGAGTTTGGGAGCAACGGCGAGGAGCCGGATTTATCATGGGTGCAGTCACTTGTGAAAGAATCTCCAACTGAGATTAAGGAGAAATTGGGAACAGCTGTTTCTAGCGAGTTATCGAATATGAGCACTGGGCAACATCCAGACAAGCTTTTGAATCTTTAG 2034 0.468 MNHLTVEIEDSFASLLDLAANNDVEHFKRSIERDPSSVDEVGLWYGRQKGSKQMVNEHRTPLMVAATYGSTDVIKLILSLSDADINRSCGLDKSTALHCASSGGAVNAVDVVKLLLAAGADPNSVDANGHYPVDVIVVPPKLAHVRSFLEELLQTDCSMAGCGLRVVTATTNSNSPPPSTSPESGSPSTLDFLLKLKLNDANTLSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTVEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSLLPGSPSSMSVMSPSPFTPPMSPSATGMSHSPVAWPQPNVPNLHLPGSNIHSSRLRSSFNARDIPVEDFDLLPDYDVQQHQLLNEMPCLSQQSMNSNHLNRSGRMKTLTPSNLDDLFSAESSSPRFADPTLSSAVFSPTHKSAVLHQFQQQQSLLSPVNTNFSSKNVEHPFLQASFQTSGRMSPRNVEPISPMGSRLSVLAQREKQQQQFRSLSSRDLGSNSAAAIAAAGGFNDNSWSEWGSTNGKLDWAVNTDELSKHRRSSSFEFGSNGEEPDLSWVQSLVKESPTEIKEKLGTAVSSELSNMSTGQHPDKLLNL 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0912 677 Gene3D - 7 158 IPR036770 -
Lele15g0912 677 MobiDBLite consensus disorder prediction 169 188 - -
Lele15g0912 677 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Lele15g0912 677 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Lele15g0912 677 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Lele15g0912 677 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lele15g0912 677 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lele15g0912 677 SMART ANK_2a 92 124 IPR002110 GO:0005515
Lele15g0912 677 PANTHER UNKEMPT FAMILY MEMBER 17 646 IPR045234 -
Lele15g0912 677 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Lele15g0912 677 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Lele15g0912 677 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Lele15g0912 677 MobiDBLite consensus disorder prediction 371 391 - -
Lele15g0912 677 SUPERFAMILY Ankyrin repeat 16 137 IPR036770 -
Lele15g0912 677 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Lele15g0912 677 Pfam Ankyrin repeats (3 copies) 53 126 IPR002110 GO:0005515
Lele15g0912 677 Gene3D - 270 333 - -
Lele15g0912 677 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0912 Lele-ChrLele15 5313615 5315648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0912 5 646 C2H2 Transcription Factor Family AT5G12850 55.199 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele15g0912 Ank_2 8.6e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g0912 15 5313615 5315648 Lele05g0888 05 5461226 5462056 CCT
Lele15g0912 15 5313615 5315648 Lele06g0744 06 4579842 4580672 CCT
Lele15g0912 15 5313615 5315648 Lele07g0927 07 5533202 5534032 CCT
Lele15g0912 15 5313615 5315648 Lele08g0744 08 4632222 4633049 CCT
Lele13g1514 13 24418926 24421228 Lele15g0912 15 5313615 5315648 hybridization
Lele14g1434 14 22784187 22786301 Lele15g0912 15 5313615 5315648 hybridization