Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0906 ATGGCCGATCCTTTCTCCAATTTCTTCTCTCCTCCTCCTCCTTCTGGATTTTTCCAATTTAATCCCATCCCTTACTACTATCCCCCTCCTCCTCCTTCTCCAGTCTCACACCAACACCATCATCATCATCCCTATCTCCACAACTTCATCGCTTCTTCTTCGTCCCCTACTTCCCCACCTCTCAGAGAGGCCCTCCCTCTTCTCAACCTCAACCCCACTAATAAGCCACATCATGATCACCACCACCACCAGCACTCTTGCAGTACTTCCATGGAAGTGGAGGACGTTACTGCTCCTAATAAGACTAAAGAAGAAGACGATGAAGAGGAGGATGAGGAAGATGATGAGAATAGTGTGACTGTTGCACTCCACATAGGCCTCCCTAGCCCTAGTGCTGCTGAGATGGCCTCTATCCTCTCTTCTTCCTCCTCTCACGCACCAGAAGCAGCCGCAGACGGCGATGCTCTTGCTGATAATTCTTCTTGCTCTGGACTCTCCAGGCTCAACAAGGGCCAGTACTGGATCCCTACTCCTACCCAGATTCTCATTGGTCCTACCCAGTTCTCTTGCCCTGTTTGCTCCAAAACCTTCAACCGCTACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCTCTGAGAGGTACACAGCCAACGGGCATGTTGAGGCTTCCTTGTTATTGTTGTGCCCCAGGTTGCAGGAACAACATCGACCACCCAAGGGCTAAGCCCCTTAAGGATTTTAGAACCCTTCAGACCCACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGCAAAGCCTTCGCTGTCAGAGGCGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGTATTGTATTTGTGGCTCTGATTTCAAACACAAGAGGTCGCTTAAAGATCATATCAAGGCTTTTGGGAGTGGCCATGCCGCTTATGGGATCCATGGCTTCGAAGAAGAAGATGAACCAGCATCCGAAGTAGAGCAAGATAATGAATCCACCCAGTGA 1050 0.4943 MADPFSNFFSPPPPSGFFQFNPIPYYYPPPPPSPVSHQHHHHHPYLHNFIASSSSPTSPPLREALPLLNLNPTNKPHHDHHHHQHSCSTSMEVEDVTAPNKTKEEDDEEEDEEDDENSVTVALHIGLPSPSAAEMASILSSSSSHAPEAAADGDALADNSSCSGLSRLNKGQYWIPTPTQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIHGFEEEDEPASEVEQDNESTQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0906 349 ProSitePatterns Zinc finger C2H2 type domain signature. 190 210 IPR013087 -
Lele15g0906 349 MobiDBLite consensus disorder prediction 50 119 - -
Lele15g0906 349 Gene3D Classic Zinc Finger 235 325 - -
Lele15g0906 349 FunFam zinc finger protein WIP2-like 187 210 - -
Lele15g0906 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 272 292 IPR013087 -
Lele15g0906 349 MobiDBLite consensus disorder prediction 133 159 - -
Lele15g0906 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 215 IPR013087 -
Lele15g0906 349 SUPERFAMILY beta-beta-alpha zinc fingers 254 292 IPR036236 -
Lele15g0906 349 Gene3D Classic Zinc Finger 187 210 - -
Lele15g0906 349 SMART c2h2final6 188 210 IPR013087 -
Lele15g0906 349 SMART c2h2final6 272 292 IPR013087 -
Lele15g0906 349 SUPERFAMILY beta-beta-alpha zinc fingers 183 210 IPR036236 -
Lele15g0906 349 FunFam Zinc finger protein WIP2 241 323 - -
Lele15g0906 349 PANTHER ZINC FINGER PROTEIN WIP2 40 346 IPR043584 GO:0003700|GO:0010468
Lele15g0906 349 Pfam Zinc finger, C2H2 type 188 207 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0906 Lele-ChrLele15 5272047 5274273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0906 1 349 C2H2 Transcription Factor Family AT3G57670 61.675 4.20e-145 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele15g0906 zf-C2H2_6 0.00034 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0893 05 5501649 5503837 Lele15g0906 15 5272047 5274273 CCT
Lele13g1520 13 24466609 24468842 Lele15g0906 15 5272047 5274273 hybridization
Lele14g1440 14 22824655 22826929 Lele15g0906 15 5272047 5274273 hybridization