Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0905 ATGGAGACCGATAGTGGTGACACCAAATCCAAGACGGAAGACTATGAAGTGATTGAGCAAATTGGCAGAGGAGCATTCGGCTCCGCTTTTCTTGTTCTCCATAACTCGGAGAATAAGAAGTATGTGTTGAAGAAGATTCGCTTGACCAAGCAAACCGAGAAATTCAAACGAACAGCGCACCAAGAGATGAACCTGATTGCAAAACTAAATAACCCATATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGGGGAGTATATATGCATTGTAACTGGCTATTGTGAAGGAGGTGACATGGCTGAGAACATAAAGAAAGCTCGGGGATCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTGACTCAGTTGCTGATAGCTGTGGACTATCTGCACTCTAATCGTGTACTCCATAGAGATCTTAAGTGTTCCAACATATTTCTCACCAAAGACAACGACATTCGTCTCGGTGACTTTGGTCTGGCAAAGCTGCTTAGTTCAGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCAAACTATATGTGTCCTGAGCTACTTGCTGATATACCCTATGGTTATAAATCTGATATCTGGTCACTTGGTTGCTGCATGTTTGAAATTGCCGCCCATCAACCAGCATTCCGTGCTCCTGATATGGCCGGGCTTATCAATAAAATAAATAGATCCTCCATTTCTCCATTGCCTATTGTTTATTCTTCCACCTTGAAACAACTCATAAAGAGCATGCTCAGGAAAAACCCTGAACATAGACCAACAGCAGCTGAATTGTTAAGGCATCCTCTTTTACAACCATATGTTCTCCGGTGTCGTAATGCATCATCTAATGTTCTTCCAGTGTATCCCATAGTCAACTCAAAGGATAAAACAAAGAGTTCTTATAAATCTGGTGGCAGAAAAGAACGTAAGGACAAAGAAGTGGGATTAGAAAACCTTTTGGATCCATTTGAGGGAAATGAAGATCTGCCTAACAACGGCAAGCTATCAGTCTCAAGCAGTGCAGAAGGCATCCTTCAGACCAGGCTGGTTGATCCTACCAGCTTCATAACTGAATCATCTACTAGTATCAGTGGCTCGAAGGATGGTTCAACAACATCTGAATCAACCATTTGCAGCATGTGCAAGGAAGCAGACTATAACAGCACACCTACAAGGGGGACAAATGAGAATGAAATTACATCAAAGAGTATGCCAGGTCCTAAGCATGGAGAACAAGTATTTTCTGCCGAACAACTTCAAAAATCAGAAGGGGTTGACATAATTGCAGTGACCACGAAAGTTGAAGTTGCTTTTCCTAATGGAGATTTCGATAAAGCTGAAATGCAGAGAGATGTCAATCTTGAGGACTCCAGGAAATCAACAGCATCAAGCGAAGGAAGCACTGATAATAAAGGTGGGTCTCTTGATGAGGAAATGTCACCCCCAGCGTTGCAGCCCAGTAGTAAGGTTGAAGATAACTCTGAATCAGGAGGAGTCTACTTACAGAAAAGGGAAGGCACAAACACATTTACAGAAGGCTCACATATATGCTTATCTTCTGAGAATTGTGACACACTTGCAAGTAAGGATGAAGGCGGAGAGAAGCCACACGACCTCGGTTGCTCCACGCATAAAGAAAATGATAGTGCTTGTGTGGTTGATCAGACACCAAGTGACAACTCATTAAGTACAATTACTGCAATAGGGGGTGATGAAGCCAAGAGCGAGTTGGATAGTTCCTGCGAGGAAAGAGCTCATGCTCTAGAGACTCTGCTTGAATTATGTGCTGAGCTACTCAAGCAACAGAAACTTGAAGAGCTTGCTGGTGTGCTGAGACCATTTGGGCCGGAAGCTGTCTCTTCCAGAGAGACAGCTATATGGTTGACAAAGAGCCTCATGTCCGCACAAAAATTCAATACTGAAACCTAG 1926 0.433 METDSGDTKSKTEDYEVIEQIGRGAFGSAFLVLHNSENKKYVLKKIRLTKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKGEYICIVTGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVLHRDLKCSNIFLTKDNDIRLGDFGLAKLLSSEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCRNASSNVLPVYPIVNSKDKTKSSYKSGGRKERKDKEVGLENLLDPFEGNEDLPNNGKLSVSSSAEGILQTRLVDPTSFITESSTSISGSKDGSTTSESTICSMCKEADYNSTPTRGTNENEITSKSMPGPKHGEQVFSAEQLQKSEGVDIIAVTTKVEVAFPNGDFDKAEMQRDVNLEDSRKSTASSEGSTDNKGGSLDEEMSPPALQPSSKVEDNSESGGVYLQKREGTNTFTEGSHICLSSENCDTLASKDEGGEKPHDLGCSTHKENDSACVVDQTPSDNSLSTITAIGGDEAKSELDSSCEERAHALETLLELCAELLKQQKLEELAGVLRPFGPEAVSSRETAIWLTKSLMSAQKFNTET 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0905 641 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele15g0905 641 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 13 529 - -
Lele15g0905 641 MobiDBLite consensus disorder prediction 294 314 - -
Lele15g0905 641 CDD STKc_Nek 14 269 - -
Lele15g0905 641 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Lele15g0905 641 SUPERFAMILY Protein kinase-like (PK-like) 12 299 IPR011009 -
Lele15g0905 641 Gene3D Transferase(Phosphotransferase) domain 1 95 283 - -
Lele15g0905 641 MobiDBLite consensus disorder prediction 458 473 - -
Lele15g0905 641 FunFam Serine/threonine-protein kinase Nek6 1 94 - -
Lele15g0905 641 MobiDBLite consensus disorder prediction 298 314 - -
Lele15g0905 641 MobiDBLite consensus disorder prediction 387 401 - -
Lele15g0905 641 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele15g0905 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Lele15g0905 641 MobiDBLite consensus disorder prediction 446 497 - -
Lele15g0905 641 MobiDBLite consensus disorder prediction 387 409 - -
Lele15g0905 641 FunFam serine/threonine-protein kinase Nek6 isoform X2 95 283 - -
Lele15g0905 641 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele15g0905 641 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0905 Lele-ChrLele15 5257321 5262008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0905 21 270 MAP Kinase Kinase Kinase AT1G53570 32.157 9.84e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lele15g0905 Pkinase 1.8e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0895 05 5519534 5524394 Lele15g0905 15 5257321 5262008 CCT
Lele13g1521 13 24478034 24482729 Lele15g0905 15 5257321 5262008 hybridization
Lele14g1442 14 22835828 22845776 Lele15g0905 15 5257321 5262008 hybridization