Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0884 ATGAGTTCCCCCTCTGCTACTGAAGCCGCCTCCAACTCCCCGACCGAGTCCCTCAACGGCTTGAAATTCGGGCAGAAGATATACTTTGAGGATGTGGGCGTGGGAGGTGGTGTGAAATCCAGCGGCGGGTCGTCGTCGTCGTCCTCAGGGCTGACCCCGAATAAGAAAGGAAGGGGTAGCGGGGCTCAGCCTCCGGGGTGTCAGGTGGAGGGCTGCAAAGTAGATCTGAGTGATGCCAAGGCTTACTATTCCAGACATAAGAATGTGCTTGTGCCCTGCCCTTTCTCATCGCTCTCTTATTCTGGTTTTTGGCATGGGAACTTTGTCTATGCACATCTGGCCATTCTTGAGTCAGGAAAGCTAATATCTTGTTTGATAGCCTTGACCAGGTTCCACCAGCTTTCTGAATTTGATCAAGTAAAACGAAGTTGTCGCAGGCGGCTTGCTGGTCATAATGAAAGGAGGAGAAAACCCCCATCCAGCTCCTTGATGGCTTCTCGATATGGCCGACTTGCTCCAGCTAATTTTGATAACAGCAACAGCAGTTGTGGTGGATTTCTGATGGAATTCGGTTCATATCCGAAACTTAGCCTGAGAAATTCAATGCCAACACCAACATCATCTGAGCAGCTTCCTGGGAATCCAACAGTGCCACTTCCATGGCAGGGCCATTCAGAGTCTCCATCATTGCTTTTCTTGCAAGCAGGTTGTTCTCCAGTTGGTGGGACAAGCTACTCTGGATCCAGAAATTCTTCATCAGGGGAAAGCTTTTCAGGATTGACGGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAGCTTGGGCCCCTCGAAACAGAGCACCAAGTCTTGGTACAAATAATTTGATGAACTTTGACGACACGCCCATCACACACCTCCCTGCATCTTCTCATCATCATGGGCACGGTACATCCCTCCACCATCAACTTTCAAACGCCTCATGGTGTTTCAAGGGCGTTGATGCTTCCGCTGCTGCTGATAACTGTTCTCATGACACTGTCCCTGACCTTGGCCTGGGTCACCAGATTTCGCACCCTATCAGCAGCTCTCTTCCTGGGGAGCTTGTCGTGTCACAACAGGGCAGGAGGCATTACATGGATCTAGAGCAGTCCAGGGTGTATCAGGATTCTCAGCATCACATGCACTGGTCTCTCTAG 1179 0.5055 MSSPSATEAASNSPTESLNGLKFGQKIYFEDVGVGGGVKSSGGSSSSSSGLTPNKKGRGSGAQPPGCQVEGCKVDLSDAKAYYSRHKNVLVPCPFSSLSYSGFWHGNFVYAHLAILESGKLISCLIALTRFHQLSEFDQVKRSCRRRLAGHNERRRKPPSSSLMASRYGRLAPANFDNSNSSCGGFLMEFGSYPKLSLRNSMPTPTSSEQLPGNPTVPLPWQGHSESPSLLFLQAGCSPVGGTSYSGSRNSSSGESFSGLTDSSCALSLLSNQAWAPRNRAPSLGTNNLMNFDDTPITHLPASSHHHGHGTSLHHQLSNASWCFKGVDASAAADNCSHDTVPDLGLGHQISHPISSSLPGELVVSQQGRRHYMDLEQSRVYQDSQHHMHWSL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0884 392 Pfam SBP domain 128 157 IPR004333 GO:0003677
Lele15g0884 392 Gene3D - 58 145 IPR036893 GO:0003677|GO:0005634
Lele15g0884 392 SUPERFAMILY SBT domain 129 163 IPR036893 GO:0003677|GO:0005634
Lele15g0884 392 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 130 367 IPR044817 GO:0003677
Lele15g0884 392 MobiDBLite consensus disorder prediction 39 56 - -
Lele15g0884 392 ProSiteProfiles Zinc finger SBP-type profile. 64 158 IPR004333 GO:0003677
Lele15g0884 392 SUPERFAMILY SBT domain 65 103 IPR036893 GO:0003677|GO:0005634
Lele15g0884 392 MobiDBLite consensus disorder prediction 38 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0884 Lele-ChrLele15 5133857 5136900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0884 21 392 SBP-box Gene Family AT3G57920 33.850 1.43e-43 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele15g0884 SBP 1.8e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0778 06 4816584 4818040 Lele15g0884 15 5133857 5136900 CCT
Lele07g0954 07 5711390 5715552 Lele15g0884 15 5133857 5136900 CCT
Lele08g0774 08 4831699 4833160 Lele15g0884 15 5133857 5136900 CCT
Lele15g0884 15 5133857 5136900 Lele05g0924 05 5686009 5690678 CCT
Lele15g0884 15 5133857 5136900 Lele06g0784 06 4852944 4861936 CCT
Lele15g0884 15 5133857 5136900 Lele07g0962 07 5762274 5767381 CCT
Lele15g0884 15 5133857 5136900 Lele08g0779 08 4873814 4877914 CCT
Lele13g1541 13 24590308 24593823 Lele15g0884 15 5133857 5136900 hybridization
Lele14g1461 14 22974390 22981412 Lele15g0884 15 5133857 5136900 hybridization