Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0880 ATGAACGAGAACAGAGCTGATTGGCAAGGGCAGATTCAACAGGGGCGGGGACAAAATGGGCATTTCAGTCCTGAGTCCGATCATCGTTCTCGTCAATATTTTGATGTGAAACAGGCTTGGAATATTGGTGGTGGAGGAGCTGAAGAGTCACCACATATGGGCTCTGCAAAATCATCTACCACCATTATGGGCGGTTTTGAATCCCCCACCTCTGCTTTTTATGCAGCAGAACGATGCATGGGGTTTCTGCAATATCATTCCCAAGTTAACATAAACAATCCCTCTTGGGGCTCTCCATTTTCTAAGATTCACGATTTGGAACTCCCTTTGTATCAATCTCCAAGGGAAGACACTTTCTTGGATCACTCGCCACACCCAGCTAACTTCAATGACGAATTATCAAACACCTTGCGAGCAGAGGTTAGATCCCAATTCGACCCAGAAAACCCCAATAAAACTCCATGTATAAATTGGCCAAACGGCAAGTTTCTTCCAATTGAACAGCACAAATTGTTCATTGATTCTGATTCTGCCTCAGTCAGGAGAAACCATACAGTTGGTTGTGAGTCATATAATTTACCAGTTTCTCATGGAAGCTTCTCTTCACTGCAAGAGAAGCTTTCTCCAATAGTCTCGGCAGCAAATGTTACAACTACTAGAAATCTTACTTCCAGTGGTGGGGCAGTAATCTCAAGTAAAACACGTATAAGATGGACTCAGGATCTTCACGACAAGTTTGTTGAATGTGTGGATCGCCTTGGGGGTGCTGAGAAGGCTACACCAAAAGCTATATTAAAGCTGATGGACACAGATGGCCTGACCATCTTCCATGTTAAGAGTCATTTGCAGAAATATAGAATTGCAAAATACATGCCAGACCCAACTCAAGGGAAGTCTGACAAAAAAGCCTATATAGACGATGTGCATCATATTGATGTCAAAACTGGCTTGCAAATCAGGGAGGCGCTTCAGCTACAGCTCGATGTTCAGAGGCGTCTCCATGAACAGCTAGAGATTCAGAGAAGATTACAGCTTCGAATTGAAGAGCAAGGAAAGCAGCTGAAGATGATGTTTGACCAGCAGCAGAAAGCATGTAGTAGCTTCTCCAATTTGGGCAGTACAGAAAACGATGATCCATCAGTTAGTCGTAAAGAGGGTGAGGTTTCAATTGCTGAAGGGTCAGGAAATTCCTCCTTCCCTTCCAAGATAAGTTAG 1215 0.437 MNENRADWQGQIQQGRGQNGHFSPESDHRSRQYFDVKQAWNIGGGGAEESPHMGSAKSSTTIMGGFESPTSAFYAAERCMGFLQYHSQVNINNPSWGSPFSKIHDLELPLYQSPREDTFLDHSPHPANFNDELSNTLRAEVRSQFDPENPNKTPCINWPNGKFLPIEQHKLFIDSDSASVRRNHTVGCESYNLPVSHGSFSSLQEKLSPIVSAANVTTTRNLTSSGGAVISSKTRIRWTQDLHDKFVECVDRLGGAEKATPKAILKLMDTDGLTIFHVKSHLQKYRIAKYMPDPTQGKSDKKAYIDDVHHIDVKTGLQIREALQLQLDVQRRLHEQLEIQRRLQLRIEEQGKQLKMMFDQQQKACSSFSNLGSTENDDPSVSRKEGEVSIAEGSGNSSFPSKIS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0880 404 MobiDBLite consensus disorder prediction 365 404 - -
Lele15g0880 404 Coils Coil 320 340 - -
Lele15g0880 404 MobiDBLite consensus disorder prediction 1 30 - -
Lele15g0880 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 230 290 IPR017930 -
Lele15g0880 404 Gene3D - 232 291 - -
Lele15g0880 404 Pfam Myb-like DNA-binding domain 237 286 IPR001005 -
Lele15g0880 404 MobiDBLite consensus disorder prediction 1 21 - -
Lele15g0880 404 SUPERFAMILY Homeodomain-like 231 287 IPR009057 -
Lele15g0880 404 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 225 375 IPR044848 GO:0003700
Lele15g0880 404 Pfam MYB-CC type transfactor, LHEQLE motif 317 364 IPR025756 -
Lele15g0880 404 FunFam Myb family transcription factor 232 290 - -
Lele15g0880 404 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 233 288 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0880 Lele-ChrLele15 5113928 5115993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0880 223 385 G2-like Transcription Factor Family AT4G28610 50.292 2.13e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele15g0880 Myb_DNA-binding 7.1e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1545 13 24612084 24614137 Lele15g0880 15 5113928 5115993 hybridization
Lele14g1463 14 22993102 22995127 Lele15g0880 15 5113928 5115993 hybridization