Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0876 ATGGCTTCTAAAGGTCCAAGGTCTAAGATTGATCACGAGAGCAGAGCAAAGCGGCAAAAGGCGCTTGAGGCTCCAAGGGAGCCTCGACGTCCTAAAACTCACTGGGATCATGTCATAGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAGAGCTAGCAAGGGCATGGTAGATCCAGCTACAAGAGGTGAAAAGAAGATGAAGGTTCTTTACAAGCATCAGATGGAGCTTGATGGGAAAAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTCTGGGTCAAACTGAAAGGTACTCAACCATGTTGGCAGAAAATCTTGTGGATGCTATTAAACCAGTTGAGAAACAGTCACCAGAGCATCATAGGAGTGCCCAATATAAGGGAGTAGATGAAGACATTATCAACAAATCTAATGAAGCTAATGCTGAGTTTCTGTCAGATCCTATTGACAATGATGAAGAATACGAGGTGCAATCTGATGATGAATCGGAGGATGATGAGCAAACCCTTGAGGAAGATGAGGCTCTTATAACTGAAGAGGAAAGGCAGGAGGAGTTGGCAGCTTTGCATGATGAAGTTGATCTTCCACTTGAGGAGTTACTGAAGCGATATTCTGAAGAGAAAGGACCAGTTAGTGAAGAAAGTAGTCCAGAGCACAGCGATGATGATAATAAAGAAGTCAGAGCTGGTGATGGAAATGAAAACAGAGACAATATTTTATCTGTTAGCAAGCTTGGCTCAAGCAACTTCAGCATGGTCTCTGGTCGTTGTTGTGATGAGAGTAATGGTGGCCTAACTACACCAGCAGATAATATAGCCGAAGATGGGACCTGTCAATCTGAAAATCTTGCATATGACTTTAGCGATGAAGAGGAAGATGGTGACTTCTTGCTTGTCACAGAAGATAATGATGATGAAACAACCTTATCCGAGGAGGAAAAATTGGAAAAAATGGGTGCAATTGATCCCAAGGATGAGGTTAAGAGCTATGGAAAACATAGGGAACATGAATCAGAAGATGATGCTTCTTTGTCGGAAGATCTTTTGGATTCTTCACTTCATGAAGATGATAGGAAGAAGGATACTACTGTTTCTGTGGATGAAGATGTCAAGCCTGTCGAGTACATGGCTTTTGTACAATCCCAGACTGAAGAACAACATTGTGAAGCACCTCATGAAAATCCGGAGGCAAGGGACAGTGAAAATCTGATAGCAGATGCAGCAGCAGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTGCGCACAAAATTCCCTTTTCTCCTCAAGTACCCTCTCCGTGAGTATCAACACATTGGATTGGATTGGCTTGTAACAATGTATGAAAAAAGGCTGAATGGGATTTTGGCAGATGAAATGGGGCTTGGTAAAACAATTATGACTATAGCTTTGCTTGCTCATCTTGCTTGTGAAAGAGGCATTTGGGGCCCACATCTCATTGTGGTACCAACTAGTGTCATGCTTAACTGGGAGACTGAATTTCTCAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGAAGTGCAAAAGAGAGGAAGCTTAAAAGACAAGGATGGTTGAAACCAAACTCATTTCATGTATGCATAACAACTTATCGATTAATTATTCAGGATTCTAAAGTCTTTAAGCGAAAGAAGTGGAAATACTTGATCCTAGATGAAGCTCATCTCATTAAAAATTGGAAGTCACAAAGATGGCAGACCCTCTTGAATTTCAATTCGAAGCGACGCATTCTCTTGACTGGTACACCGTTACAGAATGATCTGATGGAACTTTGGTCTCTCATGCATTTCTTGATGCCTCATGTTTTCCAGTCTCATCAGGAGTTTAAGGATTGGTTCAGTAATCCTATATCTGGGATGGTGGAGGGGGAGGAAAAAGTAAATAAGGAGGTTGTTGATCGGTTGCACAACGTCCTTCGTCCATTCATACTCCGTCGCTTAAAACAAGATGTGGAGAAGCAACTTCCAATGAAACATGAGCATATCATATACTGTAGATTGTCAAAAAGGCAGCGGAATTTGTATGAAGACTTCATTGCTAGTACTGAGACCCAAGCCACTCTTGCTAGTGCCAATTTTTTTGGGATGATCAGTATCATAATGCAACTCCGTAAGGTTTGCAATCATCCTGACCTTTTTGAAGGTCGTCCTATTATCAGTTCTTTTGATATGTGGGGCATTGATGTTCAGCTAAGTTCTTCTGTGTGTTCAGTGCTCTCAACCAGCCCCTTTTCGTTGGTAGACCTTAGAGGTTTTGGATTTTTATTTACTCATCTTGATTATAGCATGACTTCATGGGAGAGTGATGAAGTAAAAGCTATTGAGACCCCTGCAAGTTTAATTATGGAGCGTGCTGATATGAATGGCCTACAAGTAATTAGGCCTAAATCGAAGGATCAGAGAAGTTTTCAAGGAAATAACACTTTTGAGGAAATTCAGAGGGCAATTTGGGAAGAGAGGCTGAGAGAAGCGAAGGAACGGGCAGCAGCTATTGCATGGTGGAATTCCTTGAGGTGTAAAAAAAGGCCTGTCTATTCAACAAACCTACGGGATCTTCTTACCATTAGGCATCCGGTATATGACATTCATCAGGTGAAGGCTAACCCTAGGTCATACATGTATTCCTCAAAGCTAGCTGATATTGTCCTCTCACCAGTTGAACGTTTCCAAAGGATGGTTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCAGCACGAGCTCCACCTCCTGTTTGCTGGTGCAGCAGAAGTGAGACGCAAGTGTTTCTTCATCCATCATACAAGCAGAAATGCTCTGAAGTTTTGTCACCCCTTTTGTCGCCAATCAGGTCAGCAATTGTCCGACGGCAGGTGTATTTCCCAGATAGGCGTCTTATCCAATTTGACTGTGGTAAACTGCAGGAACTTGCAAAATTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGCATTGATATTCACCCAGATGACAAAGATGCTTGACGTACTGGAGGCTTTCATTAATTTGTATGGTTACACTTACATGAGATTAGATGGGTCAACACAACCAGAAGAGAGGCAAACCTTGATGCAACGTTTTAATACAAACCCCAAAATTTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTGGGAGCTGACACAGTTATTTTCTATGATAGTGACTGGAATCCTGCTATGGATCAACAAGCTCAAGATAGGTGCCATAGGATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATAAGTGAAAGCACCATTGAAGAGAATATATTGAAGAAAGCAAAACAGAAGCGTGCACTTGATGATTTAGTTATACAGAGTGGGGGTTATAATACTGAATTTTTCAAGAAGCTTGATCCTATGGAATTATTTTCGGGTCATAGAACACTTGTAGTGAAAAACATGCAGAAGGAGAAAAGCCAGAACATTGGGGATGAAGTTTCTGTAAGTAATGCAGATTTGGAGGCAGCATTGAAATATGCTGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAAGCTGTGGAAAACCAGGAGTTCACAGAAGAAGCCATTGGGAGACTTGATGAGGATGAGTATGTAAATGAAGATGATACAAAAGTTGATGAGCCTTCAGAATTAGCTGAATCAGTTTCTAAGTCAAGTAAGGAGAATGCATTAATGTTAGTTGGAAGTGATCCTAAGGAAGAAAAACCTCTTTCTGTATCTATCAAAGAAGATGATGTTGACATGCTGGCTGATGTCAAACAGATGGCTGCAGCGGCGGCGGCAGCTGGACAAGCTATCTCAGCCTTCGAGAACCATCTACGCCCAATTGATCGGTATGCCATTCGTTTTCTGGAGGTGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGTTTGAGGATACAGAATGGGAATTGGATCGCATTGAGAAGTACAAGGAGGAGATGGAAGCTGAAATTGATGAAGATGAAGAACCTCTCGTATATGAAACTACTGAGGCTTATCGACAGCAGGTAGAGGCCTTGGCTCAACATCAGTTAATGGAAGAACTTGAGAATGAGGCTAAGCAGAAAGAAGAAGCTGATGAAGAAAATTGTGATCCTGGAAACACTCAAACGCCAAGGGATTCTAAGCCCAGACCTAAAAAGAAACCCAAGAAAACCAAGTTTAAATCCCTGAAGAAAGGATCTTTAGCCTCTGAATCCAAACCTATGAAAGAAGAACCACAAACAGACCCAATGTCAATAGATGATGAGATTGTCACTAGTCTGGACCTGGTGTCTCCAAATTCAACTATGCAGAAAAAACGTAAAAAGCCTAAATTTATAGCTGACTGTGAAGAGGAGAAGACACTAAAAAAGTCCAAGAGGGCTGCTGATATTTGTGCTTCAGATTCAGATAATGCCTTGTTAGGTTTGCCAGATGACCATGCAGAATCAAAGCAATGTGAAAATATGGTTGAATCTGAACAGAAACCTCCCAGCAGGAGTAAAATGGGAGGGAAAATATCCATAACTCCTATGCCAGTCAAACGGATTCTGACAATAAAACCAGAAAAAGTGAAGAAGGGTAATACTTGGTCCAAAGATGGGGTTCCATCAGCTGATTTTTGGCTGCCACAGGAAGATGCAATTTTATGTGCAGTTGTTCATGAATATGGTTCTAACTGGAGTTTGGTTAGCGAAACACTCTATGGTATGACTGCTGGAGGATCGTACAGGGGCAGATACCGTCATCCTGTCCATTGCTGTGAGAGATTCAGAGAACTTGTCCAAAAATATGTTTTGTCAACAGCAGAAAATGCTAATCATGAGAGGGGCAACAGTACTGCCTCTGGAAAGTCTCTTCTGAAAGTTACGGAGGATAACATTCGGATGTTGTTAGGTGTTGCTTCTGCGCAGGAAAATAGAGAGTTATTGCTGCAGAAGCATTTTTTTGCTCTGCTTTCTTCTGTCTGGAAGGCTGCATCACGTGTTGACCGAAGGCAAAATCCGCCCCCAACACAAAATGGCCACTATTTTGATCATTGTTTCTTTACTTCTATGGGCCATAATTCTCAGAGCCTTCTGAAGAAGCCTTCTGAAAGGATGGCTGTCACTAATCTGGCCCAGAGCAGAAAGTTATTAGCTGCTGCACTTCATGATACCAGCAGTAGGCAACAGGATGATAAAATCTCTCTCTCAAATCAGGGTGATGATGTGCCTGTGACTACCGATCAGCTGGACGTGAATCTGGAATTCCCAAAAGACGAGAGTGACACCTTAATCTCATTTCCTTCTGTTATAAATTTATCCATACAAGGGACAGAGCCCCTACCATCGTTAATTTACCCAAATGGGGAAGATCATCATCTTAGAGCTTGTGGATCTGTTGCTGAGGATCGGTTCAGGGAGGCTGCCAGAGCTTGCGAGGAAGATAGTTGTCGATGGGCTTCATCAGTATTCCCAACAAATGATTCAAGATCCAGACCAGGATCTAAGATACAAGCTTCGGGAAAGCACAAGTCTTCCATCTCAGACTCCAGTAAGCCTTCTAAGTCGAAGTCAAAACGAAATTCAATGGATACTAGTGAGATGCGTCACCAACGGGTTGAGCCATTATTCCAGTCATTGCCATCACTTCAACCTAAGGATCTGAGAATCGATCTTAATTCATTAGCAATGGATGAAACGGTGACTGATGATATGGATTGCAATCTGCCCTTTGTCCCAAATGAGGAAAATTTGTTGGAAACAGAGACTTTAGGCGTGGTCCCACATGATTTCGTTGCTGGCTTAATCTCAGGCCTTGATGATTGTTCAGAATTGCCAGAATATACTGACATTGGATAA 5955 0.4183 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVIEEMVWLSKDFESERKWKLAQAKKVALRASKGMVDPATRGEKKMKVLYKHQMELDGKKKKALDKQLEFLLGQTERYSTMLAENLVDAIKPVEKQSPEHHRSAQYKGVDEDIINKSNEANAEFLSDPIDNDEEYEVQSDDESEDDEQTLEEDEALITEEERQEELAALHDEVDLPLEELLKRYSEEKGPVSEESSPEHSDDDNKEVRAGDGNENRDNILSVSKLGSSNFSMVSGRCCDESNGGLTTPADNIAEDGTCQSENLAYDFSDEEEDGDFLLVTEDNDDETTLSEEEKLEKMGAIDPKDEVKSYGKHREHESEDDASLSEDLLDSSLHEDDRKKDTTVSVDEDVKPVEYMAFVQSQTEEQHCEAPHENPEARDSENLIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACERGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPMKHEHIIYCRLSKRQRNLYEDFIASTETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIISSFDMWGIDVQLSSSVCSVLSTSPFSLVDLRGFGFLFTHLDYSMTSWESDEVKAIETPASLIMERADMNGLQVIRPKSKDQRSFQGNNTFEEIQRAIWEERLREAKERAAAIAWWNSLRCKKRPVYSTNLRDLLTIRHPVYDIHQVKANPRSYMYSSKLADIVLSPVERFQRMVDVVESFMFAIPAARAPPPVCWCSRSETQVFLHPSYKQKCSEVLSPLLSPIRSAIVRRQVYFPDRRLIQFDCGKLQELAKLLRKLKSEGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLVVKNMQKEKSQNIGDEVSVSNADLEAALKYAEDEADYMALKKVELEEAVENQEFTEEAIGRLDEDEYVNEDDTKVDEPSELAESVSKSSKENALMLVGSDPKEEKPLSVSIKEDDVDMLADVKQMAAAAAAAGQAISAFENHLRPIDRYAIRFLEVWDPIIDKAALESEVRFEDTEWELDRIEKYKEEMEAEIDEDEEPLVYETTEAYRQQVEALAQHQLMEELENEAKQKEEADEENCDPGNTQTPRDSKPRPKKKPKKTKFKSLKKGSLASESKPMKEEPQTDPMSIDDEIVTSLDLVSPNSTMQKKRKKPKFIADCEEEKTLKKSKRAADICASDSDNALLGLPDDHAESKQCENMVESEQKPPSRSKMGGKISITPMPVKRILTIKPEKVKKGNTWSKDGVPSADFWLPQEDAILCAVVHEYGSNWSLVSETLYGMTAGGSYRGRYRHPVHCCERFRELVQKYVLSTAENANHERGNSTASGKSLLKVTEDNIRMLLGVASAQENRELLLQKHFFALLSSVWKAASRVDRRQNPPPTQNGHYFDHCFFTSMGHNSQSLLKKPSERMAVTNLAQSRKLLAAALHDTSSRQQDDKISLSNQGDDVPVTTDQLDVNLEFPKDESDTLISFPSVINLSIQGTEPLPSLIYPNGEDHHLRACGSVAEDRFREAARACEEDSCRWASSVFPTNDSRSRPGSKIQASGKHKSSISDSSKPSKSKSKRNSMDTSEMRHQRVEPLFQSLPSLQPKDLRIDLNSLAMDETVTDDMDCNLPFVPNEENLLETETLGVVPHDFVAGLISGLDDCSELPEYTDIG 1984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0876 1984 MobiDBLite consensus disorder prediction 1420 1434 - -
Lele15g0876 1984 MobiDBLite consensus disorder prediction 129 153 - -
Lele15g0876 1984 FunFam Photoperiod-independent early flowering 1 424 699 - -
Lele15g0876 1984 Coils Coil 1382 1405 - -
Lele15g0876 1984 Coils Coil 1213 1233 - -
Lele15g0876 1984 MobiDBLite consensus disorder prediction 252 300 - -
Lele15g0876 1984 MobiDBLite consensus disorder prediction 1854 1902 - -
Lele15g0876 1984 Gene3D - 700 751 - -
Lele15g0876 1984 Gene3D - 958 1215 IPR027417 -
Lele15g0876 1984 ProSiteProfiles Myb-like domain profile. 1579 1632 IPR001005 -
Lele15g0876 1984 MobiDBLite consensus disorder prediction 1521 1544 - -
Lele15g0876 1984 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 466 631 IPR014001 -
Lele15g0876 1984 CDD DEXQc_SRCAP 454 676 - -
Lele15g0876 1984 SMART bromneu2 23 94 IPR014012 -
Lele15g0876 1984 MobiDBLite consensus disorder prediction 1854 1879 - -
Lele15g0876 1984 Pfam HSA domain 27 75 IPR014012 -
Lele15g0876 1984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 437 676 IPR027417 -
Lele15g0876 1984 MobiDBLite consensus disorder prediction 1435 1454 - -
Lele15g0876 1984 FunFam Photoperiod independent early flowering protein 1575 1636 - -
Lele15g0876 1984 Coils Coil 179 199 - -
Lele15g0876 1984 Gene3D - 423 699 IPR038718 -
Lele15g0876 1984 SMART helicmild6 1025 1108 IPR001650 -
Lele15g0876 1984 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 700 765 - -
Lele15g0876 1984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 678 1184 IPR027417 -
Lele15g0876 1984 MobiDBLite consensus disorder prediction 1 33 - -
Lele15g0876 1984 CDD SF2_C_SNF 984 1119 - -
Lele15g0876 1984 MobiDBLite consensus disorder prediction 162 196 - -
Lele15g0876 1984 MobiDBLite consensus disorder prediction 326 362 - -
Lele15g0876 1984 MobiDBLite consensus disorder prediction 1394 1458 - -
Lele15g0876 1984 Pfam SNF2-related domain 471 743 IPR000330 GO:0005524|GO:0140658
Lele15g0876 1984 MobiDBLite consensus disorder prediction 1880 1902 - -
Lele15g0876 1984 Gene3D - 1575 1636 - -
Lele15g0876 1984 Coils Coil 1340 1360 - -
Lele15g0876 1984 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 961 1215 - -
Lele15g0876 1984 PANTHER HELICASE SRCAP-RELATED 15 83 - -
Lele15g0876 1984 MobiDBLite consensus disorder prediction 197 249 - -
Lele15g0876 1984 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 999 1149 IPR001650 -
Lele15g0876 1984 ProSiteProfiles HSA domain profile. 22 99 IPR014012 -
Lele15g0876 1984 SMART ultradead3 450 643 IPR014001 -
Lele15g0876 1984 MobiDBLite consensus disorder prediction 301 325 - -
Lele15g0876 1984 Coils Coil 837 857 - -
Lele15g0876 1984 Pfam Helicase conserved C-terminal domain 996 1108 IPR001650 -
Lele15g0876 1984 MobiDBLite consensus disorder prediction 128 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0876 Lele-ChrLele15 5067551 5080098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0876 474 746 RAD5 or RAD16-like Gene Family AT5G43530 28.882 2.53e-28 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele15g0876 SNF2_N 3.3e-70 CL0023