Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0839 ATGTCGAGGGAAGGGAGGAGACAGACGGTAAACCATCGAACAGAAACAACAAAGACAACAGAGATGGGAGAAGCCCTACAGAAACAACTGACGGTGAAGCTCGCCGCATCATCGAGAAGCAAGCACCAGGAGCAGTTACTCTCCACATCTTTCTCGCCTGAGAGGAATTTCACTAGATACGTGACGGTACACAGATTTCATACGCTTACTTCTTTCCTCTCGAAATTAGATTCTTGGTTATTTTCATTTGCTGTTTGTTGCTCTCAACCAAGGATGGCTTCTAGATTCTGGACACAGGGTGCCAGTGACTCCGAGGAGGAGGAGAGTGACTATGATGAAGATGTTGAGAATGTAGTGGGCGAATCTACCAACCAAGCTGTTAAAAGCAGATACTTGCAGGGTAACGCTAGTGATAGTGATGATTCTGATGATCAGAAGCGTGTTGTTAGGTCAGCAAAAGACAAGCGATTTGAAGAGATGTCATCTACAATTGGCCAGATGAAGAATGCTATGAATATTAATGACTGGGTGAGCTTGCAAGAGACCTTTGATAAGATAAACAAGCAGCTTGAGAAAGTCATGCGTATCACTGAATCTGAGAAGGTCCCTACTCTTTACATAAAGGCACTTGTGATGTTGGAAGACTTCCTGGCACAGGCATTGGCAAACAAGGATGCCAAAAAGAAGATGAGTAGTAGTAATGCTAAAGCATTGAACTCAATGAAGCAGAAATTGAAGAAGAATAATAAGCAATATGAGGATTTGATTACTAAATATAGAGAAAATCCTGAGAGTGAGGAGGACAAAGATGAAGAGGAGACCGAGGATGAGGATGAAAGTGAGGAGGAGGTAATTGAGGAGATTGATAAGATACAAAAGTCTGATTCTGAAGATGGCGATCAAGATGATGAGAAGTCAGATGCAATTGATACCCCTTGGGACCAAAAACTTAGCAAGAAAGACAGGCTTATGGATAGGCAATTTATGAAAGACCCTAGTGAGATCTCATGGGACATGGTTAACAAGAAGTTCAAAGAAGTTGTGGCAGCTAGGGGCAGGAGGGGAACTGGAAGGTTTGAGCAGGTTGAGCAGCTTACCTTCTTAACAAAAGTTGCCAAAACACCTGCGCAGAAGCTGGACATATTTTTCAGTGTTGTTTCTGCTCAATTTGATGTTAATCCTGGTTTAAATGGGCACATGCCTATTAATGTGTGGAAGAAATGCGTGCAGAATATGCTGGTCATTCTTGATATTCTTGTGCAGTACCCGAACATAATTGTTGATGATACAGTGGAGCCTGATGAGAATGAAACTCAGAAGGGCGCTGACCATAGTGGACCAATTCGGGTATGGGGCAACTTAGTTGCATTCCTAGAAAGAATTGATGCTGAGTTTTTCAAGAGCTTGCAATGCATTGACCCTCATACTCGTGAGTATGTTGAGAGACTCAAGGATGAGCCCATGTTTATGGCTCTTGCTCAGAATGTCCAGGATTATCTTGAAAGGGCTGGAGATTTCAAAGCTTCATCAAAGGTAGCCCTTAGACGTGTTGAACTCATCTATTACAAACCACAGGAGGTTTATGATGCCATGAGGAAATTGGCTGAACTGACAGATGACAATAATGGAGAGGTGGATGACGAGTCTAAAGGGTTTGAGGATACAAGGACTCCTACCGCATTTGTTGTAACTCCTGAGCTTGTTCCTCGAAAACCTACCTTCCCAGAGAATAGTAGGACACTGATGGACTTATTGGCGTCCCTGATATACAAGTATGGGGATGAGCGGACAAAGGCACGTGCTATGCTTTGTGATATATATCACCATGCTCTTCTGGATGAGTTCTCAACTGCCCGTGATCTTCTGCTTATGAGCCATTTGCAGGATAGTGTTCAGCATATGGACATATCAACACAGATACTTTTTAACAGGGCTATGTCACAGCTAGGTCTTTGTGCTTTTCGGGTTGGACTGATTTCTGAGGCTCATGGCTGTCTCTCTGAATTATATTCTGGTGGAAGGGTGAAGGAGCTGCTTGCTCAAGGTGTCTCACAAAGTCGTTATCACGAGAAGACGCCAGAGCAGGAAAGGTTGGAAAGGAGACGTCAGATGCCATATCATATGCACATTAACCTTGAGCTCCTGGAGTCAGTGCATCTTATATGTGCTATGCTTCTGGAAGTTCCTAACATTGCAGCTAATGACCATGATGCAAAGCGCAAAGTTATTAGCAAGACTTTCCGTCGCTTGCTTGAGGTCAGTGATAAGCAAACATTTACCGGCCCACCTGAAAATGTCAGAGATCATGTCATGGCTGCTACTAGGGCCCTGAGCAAGGGAGATTTCCATAAGAGTTATGATATCATCAAGTCGTTGGATGTCTGGAAATTTGTTAGAAATCATGACAAGGTGCTGGAAATGCTCAAGGAAAAAATCAAGGAGGAGGCACTAAGGACTTACCTCTTTACCTTCTCTTCATCCTATGACTCTATGAGCCTTGAGCAACTCACAAAAATGTTTGACCTCTCTATTCCTCACACCCATAGCATAGTTAGTAGGATGATGATAAATGAGGAGCTGCATGCAAGCTGGGACCAACCAACTGGCTGCATTATTTTCCAGGATGTAAAGCACTCTAGATTGCAGGCTTTGGCATTCCAGTTGACGGAGAAGTTATCTATCCTTGCAGAGAGTAATGAAAGAGCAATAGAGGCAAGGATAGGTGGTGGTGGATTGGATCTTCCCCTAAGGCGGCGAGATAGCCAGGACTATGCTGCTGCTGCTGCTGCACCAACTACTGGTGGTGGTAGGTGGCAAGACTTGTCAGTTGGTCAGACAAGGCAAGGCAGTGGTACTGGACGTACAGGATATAGTATCGGTGGCGGAAGGCCATTTACATTGAGCCAAAATGGCTATTCAAGGGACCGAACAGGAAGAGGTGCAGGTGGAGGCTATCAGAGTACGAGATATCAAGACTCTGCATATGGTGGTTCAGGGAGGTCAACTCAGGGTTTAGCACACAGGGGAGCCCAGGGGGATGCATCTACTCGTATGGTTAGCCTTAAAGGTGTTCGTGCTTGA 3081 0.445 MSREGRRQTVNHRTETTKTTEMGEALQKQLTVKLAASSRSKHQEQLLSTSFSPERNFTRYVTVHRFHTLTSFLSKLDSWLFSFAVCCSQPRMASRFWTQGASDSEEEESDYDEDVENVVGESTNQAVKSRYLQGNASDSDDSDDQKRVVRSAKDKRFEEMSSTIGQMKNAMNINDWVSLQETFDKINKQLEKVMRITESEKVPTLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLITKYRENPESEEDKDEEETEDEDESEEEVIEEIDKIQKSDSEDGDQDDEKSDAIDTPWDQKLSKKDRLMDRQFMKDPSEISWDMVNKKFKEVVAARGRRGTGRFEQVEQLTFLTKVAKTPAQKLDIFFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQYPNIIVDDTVEPDENETQKGADHSGPIRVWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLKDEPMFMALAQNVQDYLERAGDFKASSKVALRRVELIYYKPQEVYDAMRKLAELTDDNNGEVDDESKGFEDTRTPTAFVVTPELVPRKPTFPENSRTLMDLLASLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLICAMLLEVPNIAANDHDAKRKVISKTFRRLLEVSDKQTFTGPPENVRDHVMAATRALSKGDFHKSYDIIKSLDVWKFVRNHDKVLEMLKEKIKEEALRTYLFTFSSSYDSMSLEQLTKMFDLSIPHTHSIVSRMMINEELHASWDQPTGCIIFQDVKHSRLQALAFQLTEKLSILAESNERAIEARIGGGGLDLPLRRRDSQDYAAAAAAPTTGGGRWQDLSVGQTRQGSGTGRTGYSIGGGRPFTLSQNGYSRDRTGRGAGGGYQSTRYQDSAYGGSGRSTQGLAHRGAQGDASTRMVSLKGVRA 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0839 1026 SMART PINT_4 807 895 IPR000717 -
Lele15g0839 1026 MobiDBLite consensus disorder prediction 225 244 - -
Lele15g0839 1026 MobiDBLite consensus disorder prediction 99 119 - -
Lele15g0839 1026 MobiDBLite consensus disorder prediction 938 955 - -
Lele15g0839 1026 Pfam PCI domain 746 874 IPR000717 -
Lele15g0839 1026 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 807 895 - -
Lele15g0839 1026 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 92 1021 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele15g0839 1026 MobiDBLite consensus disorder prediction 1 24 - -
Lele15g0839 1026 MobiDBLite consensus disorder prediction 103 117 - -
Lele15g0839 1026 MobiDBLite consensus disorder prediction 1 19 - -
Lele15g0839 1026 MobiDBLite consensus disorder prediction 226 244 - -
Lele15g0839 1026 MobiDBLite consensus disorder prediction 258 316 - -
Lele15g0839 1026 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 136 738 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele15g0839 1026 MobiDBLite consensus disorder prediction 984 1009 - -
Lele15g0839 1026 SUPERFAMILY "Winged helix" DNA-binding domain 803 878 IPR036390 -
Lele15g0839 1026 Coils Coil 235 262 - -
Lele15g0839 1026 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 93 956 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele15g0839 1026 MobiDBLite consensus disorder prediction 266 285 - -
Lele15g0839 1026 ProSiteProfiles PCI domain profile. 706 878 IPR000717 -
Lele15g0839 1026 MobiDBLite consensus disorder prediction 929 1026 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0839 Lele-ChrLele15 4862796 4868866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0839 92 1025 Eukaryotic Initiation Factors Gene Family AT3G56150 67.694 0.0 1214