Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0838 ATGTTCATTTTTATCAGTTCTCATCTTCTTTCTTTGTTTCGATGCCTCTATGAGCTGCTGGCGAAGCATGTTGTGGTTGTTAAAGTCATTGGACGCACTGGATCCAGAGGGCAAGTGACTCAAGTTAGAGTCAAGTTTTTGGATGATCATAACCGTTATATCATGAGGAATGTGAAAGGACCCGTGAGAGAAGGAGACATTCTTACCCTACTTGAGTCTGAAAGGGAAGCTAGAAGACTTCGCTAG 246 0.4268 MFIFISSHLLSLFRCLYELLAKHVVVVKVIGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0838 81 ProSitePatterns Ribosomal protein S28e signature. 72 80 IPR028626 -
Lele15g0838 81 FunFam 40S ribosomal protein S28 18 81 - -
Lele15g0838 81 Gene3D - 19 81 IPR012340 -
Lele15g0838 81 PANTHER 40S RIBOSOMAL PROTEIN S28 21 81 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele15g0838 81 Hamap 30S ribosomal protein S28e [rps28e]. 5 81 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele15g0838 81 Pfam Ribosomal protein S28e 23 80 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lele15g0838 81 SUPERFAMILY Nucleic acid-binding proteins 21 81 IPR012340 -
Lele15g0838 81 CDD S1_S28E 22 81 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0838 Lele-ChrLele15 4859159 4859560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0838 22 81 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 90.000 1.88e-32 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1509 14 23261400 23261766 Lele15g0838 15 4859159 4859560 hybridization