Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0816 ATGGAGAGTGACATTAGACGTACTGCACAGGAAACAATTCATATGGCCATGCAAACTGCTTATTTCAAAGAACATGAAGGACTTGTCCACAATGCCATTGGGCAATTGTCATCTGTAACCTCAGCCCCCTGGTGGACTTCCATTGGATCTCAAACAGTTCAACATGAGTCTTTGGGTCAGATGAGACCTTTTTCACTGGACTTTCCCAACTATGTCGACCATCTTACCTGCCAGAAACAGCCAGGAAAAGCAGCTCATCAGGTTTTGGATAAAGGACACACAACACAGTTCACTATCTTCCCAGAAGATTGCGAGATGTCAGATGATACACAAAAGCATCAGGTAGTCATGTCACTTCATTCATCCTCTCCTGAACCTCGTGGTCACTTTGAGATAAAATTTAGTCAGCCTATGATCTGTTCAAAATATCCTTATACGGATCGATTTTATGGGCTCATCTCAGCCTATGGACCTCAGATTCCGGGCCGTTTAATGCTGCCACTTAACTTCACATCCAATGATGGGCCAATTTATGTCAATGCTAAGCAGTATCATGGGATCATCAGACGTCGGCAGTCACGTGCAAAGGCTTTACTTGAGAATAAATTCACAAAACGCCGCCGGCCCTATATGCATGAATCACGTCACCTGCATGCAATGAGGCGACCAAGAGGATGCGGTGGTCGCTTCTTGAACACTAGAAATCTGAAGCGTGGAAATGGTGAAAGCGGAAGCACGGCGATCAAAACTGGGGAGGGTCTATTCCAATCTAGTGGTTCTCAGAGTTCTGAAGTTCCGCAATCAGAGGGTAATGGAACTCTGAATTCATCAAAGGAAACCAATGGCAGCAGTTCAAATGTTTCAGGGTTCGACGTGACTAGCATGTATGCAGCACGGGGAACTTTCGATAGCTTTGGTCTCAATCATGTGGGGTCCACTGTGCACTCTCTTGCAGACATGATAGATCATAGCGGACGTGGCATTGCCATGCCTGCGAAATGGGTTGCAGCAGCAGGTAACTGCTGCAAACTCTAA 1035 0.4599 MESDIRRTAQETIHMAMQTAYFKEHEGLVHNAIGQLSSVTSAPWWTSIGSQTVQHESLGQMRPFSLDFPNYVDHLTCQKQPGKAAHQVLDKGHTTQFTIFPEDCEMSDDTQKHQVVMSLHSSSPEPRGHFEIKFSQPMICSKYPYTDRFYGLISAYGPQIPGRLMLPLNFTSNDGPIYVNAKQYHGIIRRRQSRAKALLENKFTKRRRPYMHESRHLHAMRRPRGCGGRFLNTRNLKRGNGESGSTAIKTGEGLFQSSGSQSSEVPQSEGNGTLNSSKETNGSSSNVSGFDVTSMYAARGTFDSFGLNHVGSTVHSLADMIDHSGRGIAMPAKWVAAAGNCCKL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0816 344 SMART cbf3 172 233 IPR001289 GO:0003700|GO:0006355
Lele15g0816 344 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 230 IPR001289 GO:0003700|GO:0006355
Lele15g0816 344 MobiDBLite consensus disorder prediction 222 287 - -
Lele15g0816 344 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700|GO:0006355
Lele15g0816 344 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 76 293 IPR001289 GO:0003700|GO:0006355
Lele15g0816 344 Gene3D - 174 234 - -
Lele15g0816 344 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700|GO:0006355
Lele15g0816 344 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700|GO:0006355
Lele15g0816 344 MobiDBLite consensus disorder prediction 236 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0816 Lele-ChrLele15 4720070 4725362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0816 13 344 CCAAT-HAP2 Transcription Factor Family AT3G05690 41.477 2.40e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele15g0816 CBFB_NFYA 1.7e-24 No_clan