LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele15g0809	ATGGCGACGTACTTTCATGGTAATCCTGAAATCCAACCATCCGATGGCCTCCAAACTCTGGTTCTCATGAACCCCGGCTACATCCACTACTCCGACACGCCGCCGCACCCCAGCAACTTGGTCTTCCTCAACTCCATCGCCGCCGGCAACAACTCGCTTACTCCCCAAAACTTCCCCCACGTGCCGCCCAGTCACACCCAGCAATTCGTGGGCATCCCTCTGCCGACAATCGCCGCCTCCTCCTCCCAGGATCCCAACCAGCAACACTCCGTGCACGCTCATCAAGATGTCTCCACCTTGCATGGATTTGTGCCTCGCATGCAGTGCAATCTCTGGAACCCAATCGACCCAAACGCGACGCCGCGTGACACTCCACGAGCACAGCAGGGACTGTCGCTTAGCCTGTCCTCCCAGCAAGCTGGAATGGGGTCTTTCCGTGTTGATCGCGACGTGACATCGCAGGGTCAAGCGCCTGCTATGTCTGGCGAAGACGTTCGCGGGTCGCCGTCTTCGGCTTCTGGGGTGACCAACGTGAACGGTGTTTCGGGGATTCAGAGTGTGCTTCTAAGCTCCAAGTACTTGAAAGCGGCACAGGAACTTCTTGACGAGGCCGTCAACGTTAACAACGGCATCAAGACTGAACTGGGAAAGAAGAGCGGTGGGGCCCATACTAAAGCCACTGGGGAGACATCCGGAACAGCAGCAAGTGGCGACGGCTCTGTCGGCGGAGAAGGAAACGCTAAGCGTGCCTCTGAGCTATCGGCTGCGGATAGACAAGAAATCCAGATGAAGAAGGCTAAGCTAATCAGCATGCTCGATGAGGTGGAGCAGAGGTACAGGCAGTACCACCAGCAGATGCAGATAGTGATTTCGTCATTCGAGCAAGCTGCGAGAATTGGATCAGCCAGAACATACACAGCCCTTGCGCTGCGAACAATCTCGAAGCAGTTTCGGTGCTTGAAGGATGCCATAACAGCCCAAATTCGGGCTGCTAACAAGAGCTTAGGAGAGGAAGATTGCTTTGGAACCAAGATTGAAGGTTCGAGGCTCAAGTACGTGGACCATCACCTGCGCCAACAGCGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTACCCGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAGCACTTCCTCCACCCTTATCCCAAGGATTCAGACAAACGTATGCTTGCTAAGCAAGCCGGCCTCACTAGGAGCCAGGTTTCGAATTGGTTCATAAATGCTCGAGTTCGGCTCTGGAAACCAATGGTTGAAGATATGTACATGGAGGAGATGAAGGAGCAAGAACATAATGGATCTGAAGATAAATCAAGCAAGAGCGGTGAAGATCCAGCTATTAAAACTGCAGCTCCACAACAAAAAGGCCCTGCCACTGAAACGGACGCTAGAAGCCTCAACTCCAACCAAGACACGCCTTCAAACCACAATAACACTCCTTCTGTTTCAGTTTCTAAACCATTGATATCATCACCGACTGGGGATGATAATGTCAGAAACCGGTTTGGGTTCAGCTTCATGGGATCATCAGAGCTAGAAGGGATCACGCAAGCAAGTCCCAAGAAACCAAGAAACCAGGAAATTCTACACTTCCCAACTTCAATAAACATGGACGTGAAGACCAATGAGGCCAACAATGAGCAACTTTCAATAAAATTTGGAGAGGATGAGAGGCAGGGGAGGGATGAATACTCATTCATGGGAACCCAATCAAATTTTATCGGAGGTTTTGGACAATACCCAATTGGTGAGATTGGAAGGTTTGACGCAGAGCAGTTTACTCCAAGGTTTTCCGGTAATGGGGTTTCCCTGACTCTTGGTCTTCCCCACTGTGACACGTTGTCGGGAAGCCATCAAACTTTTCTCCCAAACCAGAGCATTCAATTGGGAAGAAGACTGGAGATGGGTGAATCAAACGAGTATGGAGCCATAAACCCTTCCACTACTCACTCATCAGCTGCATTTGAGAACATGAACATGCAGAACCCAAAGAGGTTCGCTGCACAGTTGTTGCCAGACTTTGTCACCTAA	2085	0.5103	MATYFHGNPEIQPSDGLQTLVLMNPGYIHYSDTPPHPSNLVFLNSIAAGNNSLTPQNFPHVPPSHTQQFVGIPLPTIAASSSQDPNQQHSVHAHQDVSTLHGFVPRMQCNLWNPIDPNATPRDTPRAQQGLSLSLSSQQAGMGSFRVDRDVTSQGQAPAMSGEDVRGSPSSASGVTNVNGVSGIQSVLLSSKYLKAAQELLDEAVNVNNGIKTELGKKSGGAHTKATGETSGTAASGDGSVGGEGNAKRASELSAADRQEIQMKKAKLISMLDEVEQRYRQYHQQMQIVISSFEQAARIGSARTYTALALRTISKQFRCLKDAITAQIRAANKSLGEEDCFGTKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKRMLAKQAGLTRSQVSNWFINARVRLWKPMVEDMYMEEMKEQEHNGSEDKSSKSGEDPAIKTAAPQQKGPATETDARSLNSNQDTPSNHNNTPSVSVSKPLISSPTGDDNVRNRFGFSFMGSSELEGITQASPKKPRNQEILHFPTSINMDVKTNEANNEQLSIKFGEDERQGRDEYSFMGTQSNFIGGFGQYPIGEIGRFDAEQFTPRFSGNGVSLTLGLPHCDTLSGSHQTFLPNQSIQLGRRLEMGESNEYGAINPSTTHSSAAFENMNMQNPKRFAAQLLPDFVT	694

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele15g0809	694	Pfam	Homeobox KN domain	391	430	IPR008422	GO:0003677\|GO:0006355
	Lele15g0809	694	MobiDBLite	consensus disorder prediction	472	516	-	-
	Lele15g0809	694	SMART	prehox3	182	326	IPR006563	-
	Lele15g0809	694	Coils	Coil	258	285	-	-
	Lele15g0809	694	MobiDBLite	consensus disorder prediction	114	175	-	-
	Lele15g0809	694	Pfam	Associated with HOX	187	325	IPR006563	-
	Lele15g0809	694	Coils	Coil	194	214	-	-
	Lele15g0809	694	FunFam	BEL1-like homeodomain protein 9	377	439	-	-
	Lele15g0809	694	CDD	homeodomain	374	435	IPR001356	GO:0003677
	Lele15g0809	694	SMART	HOX_1	374	438	IPR001356	GO:0003677
	Lele15g0809	694	MobiDBLite	consensus disorder prediction	444	461	-	-
	Lele15g0809	694	Gene3D	-	377	456	-	-
	Lele15g0809	694	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	92	458	-	-
	Lele15g0809	694	MobiDBLite	consensus disorder prediction	213	255	-	-
	Lele15g0809	694	ProSiteProfiles	'Homeobox' domain profile.	371	434	IPR001356	GO:0003677
	Lele15g0809	694	SUPERFAMILY	Homeodomain-like	375	441	IPR009057	-
	Lele15g0809	694	MobiDBLite	consensus disorder prediction	114	159	-	-
	Lele15g0809	694	MobiDBLite	consensus disorder prediction	444	519	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele15g0809	Lele-ChrLele15	4668882	4671476	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele15g0809	1	693	Homeobox Transcription Factor Family	AT2G35940	50.394	6.77e-180	526

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Lele15g0809		POX	8.1e-49	No_clan