Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0766 ATGCCAGGGATGAGAAGCAGTGATGTTGAAGCCCAAAATCCAGAGTCACAAGATAATCAGGGTGACCTTGAAAAACCTACGGATTCTGAAGAGAAGGTAGATTTTGATGCGGATGATGATGATGATCAAGGGGATGCCGAGGAGGAAGAAGTTGAATATGAAGAAGTAGAGGAGGAGGAGGAAGTGGAAGGGGAAGAGGAAGATGAAGAGGAGGGGGTGGAGGAAGAGACTGAAGGGGCTGGCAATAGAAATGTTGCAGTCTCTGAGGATGAAGATGAGAAAAAGAAGCATGCAGAGCTTCTTGAACTTCCACCTCATGGTTCAATGGTTTACCTTGGTGGAATTCCTCACAATGCTTCTGAAGAGGATTTAAGGGACTTCTGTCAATCTGTGGGAGATGTATTTGAGGTTAGGATTATGAGGGGAAAAGAATCTGGTGAAGCGAAAGTTTATGCTTTTGTGACCTTCAAGACACAGGAGATGGCTTCTAAGGCTATTGAGAAGCTGAACAAGTCTAAATTTCAGGGAAATGAAATAAAATGCTCAGCATCTAAAGAAAAGCTTAGGTTGTTTATTGGTAATATACCTAGACATTGGACAGAGGAAGATTTGAGGAAGGCTGTTACAGTTATTGGGCCTGGTGTCAATTCTATTGAACTGTTGAAGGTTTTTGACACAATTTCCATTGAACTAAAGAATTCAGATCGTAATCGTGGATTTGCTTTTATTGAGTATTACAATCATGCATGTGCAGAATATTCAAGACAGAAGATGTCCAATCCAAAATTTAAACTCGACAACAATTCTCCAACAGTGAAGTGGGCTGAACCTAAGAATGCTGAATCATCTGCAGCCTCCCAGGTAAAGGCAGTGTATGTAAAGAATCTGCCAGAAAACATTACTCGGGATTGCCTTAAGGAGTTGTTTGAGCATCATGGAGAGATCACAAAAGTGGTAATCCCTCCTGCTAAAGCTGGACATGAAAAGAGCAGATTTGGTTTTGTTCACTTTGCTGAGAGGTCTTCTGCCAGGAAGGCATTGGAGGATACCGAGAAATATGAAATTGACGGCCAAGTTTTGGAGTGTTCACTTGCAAAACCACAAGCAGATCAGAAGTCATCTAGGACACCATTTTCACAAAACTCGATTGTACTCCCAACTTATCCACCTCAACTTGGTTATGGTTTGGTTGGAGGTGCCTATGGTGCTTTGGGTTCAAGATATGGTGCGGCTGACTTTACACGACCGTTGGTCTATGGTAGGGGAGCGGCTCCTGCTGGCATGGCAATGATGCCTGTGCTCTTACCTGATGGAAGGATCGGATATGTATTGCAACAGTCAGGATTGCAACAACATTCCCGTTCATCGCCATCCCTTGGTGGCAGGAGAAGCGGCAGCTCCAGTAGTGGGAGGCGCAATGATGATCAGAGTAGGAGCCGATATCATCCCTACTAA 1455 0.4385 MPGMRSSDVEAQNPESQDNQGDLEKPTDSEEKVDFDADDDDDQGDAEEEEVEYEEVEEEEEVEGEEEDEEEGVEEETEGAGNRNVAVSEDEDEKKKHAELLELPPHGSMVYLGGIPHNASEEDLRDFCQSVGDVFEVRIMRGKESGEAKVYAFVTFKTQEMASKAIEKLNKSKFQGNEIKCSASKEKLRLFIGNIPRHWTEEDLRKAVTVIGPGVNSIELLKVFDTISIELKNSDRNRGFAFIEYYNHACAEYSRQKMSNPKFKLDNNSPTVKWAEPKNAESSAASQVKAVYVKNLPENITRDCLKELFEHHGEITKVVIPPAKAGHEKSRFGFVHFAERSSARKALEDTEKYEIDGQVLECSLAKPQADQKSSRTPFSQNSIVLPTYPPQLGYGLVGGAYGALGSRYGAADFTRPLVYGRGAAPAGMAMMPVLLPDGRIGYVLQQSGLQQHSRSSPSLGGRRSGSSSSGRRNDDQSRSRYHPY 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0766 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 277 IPR000504 GO:0003723
Lele15g0766 484 SMART rrm1_1 109 182 IPR000504 GO:0003723
Lele15g0766 484 SMART rrm1_1 189 273 IPR000504 GO:0003723
Lele15g0766 484 SMART rrm1_1 290 363 IPR000504 GO:0003723
Lele15g0766 484 CDD RRM_SF 110 182 - -
Lele15g0766 484 SUPERFAMILY RNA-binding domain, RBD 105 280 IPR035979 GO:0003676
Lele15g0766 484 Coils Coil 46 76 - -
Lele15g0766 484 SMART rrm2_1 109 182 IPR003954 GO:0003676
Lele15g0766 484 SMART rrm2_1 290 363 IPR003954 GO:0003676
Lele15g0766 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 263 IPR000504 GO:0003723
Lele15g0766 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 360 IPR000504 GO:0003723
Lele15g0766 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 180 IPR000504 GO:0003723
Lele15g0766 484 Gene3D - 189 276 IPR012677 -
Lele15g0766 484 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 16 464 - -
Lele15g0766 484 SUPERFAMILY RNA-binding domain, RBD 286 375 IPR035979 GO:0003676
Lele15g0766 484 Gene3D - 277 381 IPR012677 -
Lele15g0766 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 367 IPR000504 GO:0003723
Lele15g0766 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Lele15g0766 484 MobiDBLite consensus disorder prediction 33 76 - -
Lele15g0766 484 Gene3D - 24 188 IPR012677 -
Lele15g0766 484 MobiDBLite consensus disorder prediction 447 484 - -
Lele15g0766 484 MobiDBLite consensus disorder prediction 447 472 - -
Lele15g0766 484 MobiDBLite consensus disorder prediction 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0766 Lele-ChrLele15 4405883 4408635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0766 110 390 Eukaryotic Initiation Factors Gene Family AT4G34110 24.843 4.91e-14 72.8