LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele15g0745	ATGGCGGAAGAGCACCGATGCCAAGCTCCCGAAGGCCACCGACTCTGTGCTAATAACTGCGGCTTCTTCGGCAGCCCGGCCACCATGAATCTCTGTTCAGAGTGCTACAGGGATTTCCGTTTGAAGGAGCAACAAGAAGCCTCCACCAAATCCACCATCGAAACCGCCCTCTCCTCCGCTGCTGCGCCGTCCTCGGGGTCATCTCTGTTGCCGGCCGTGGAGTCACCCTCTCCTCCGCCGATGTTGACATTACCGGAAGTTGCAGTAGATGCGCCGAGCTCGGCTGTTGCATCCCCCGTGCCGGAAGTGGCGACCACGCAACCGAACCGATGCGCCGCATGCCGGAAACGGGTCGGGCTGACCGGGTTCAAGTGCAAGTGCGGTGTCACGTTTTGTGGGGCCCACAGGTATCCCGAGAAACACGGGTGTAGCTTCGATTTCAAGAAGGTGGGCCGAGAGGAAATAGCTCGGGCAAACCCTTTGATCAAGGGGAAGAAGCTCGAGACGATTTAA	513	0.5887	MAEEHRCQAPEGHRLCANNCGFFGSPATMNLCSECYRDFRLKEQQEASTKSTIETALSSAAAPSSGSSLLPAVESPSPPPMLTLPEVAVDAPSSAVASPVPEVATTQPNRCAACRKRVGLTGFKCKCGVTFCGAHRYPEKHGCSFDFKKVGREEIARANPLIKGKKLETI	170

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele15g0745	170	MobiDBLite	consensus disorder prediction	62	82	-	-
	Lele15g0745	170	SMART	AN1_Zf_4	111	148	IPR000058	GO:0008270
	Lele15g0745	170	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	15	57	-	-
	Lele15g0745	170	PANTHER	AN1-TYPE ZINC FINGER PROTEIN	13	170	-	-
	Lele15g0745	170	Pfam	A20-like zinc finger	14	37	IPR002653	GO:0003677\|GO:0008270
	Lele15g0745	170	ProSiteProfiles	Zinc finger A20-type profile.	10	44	IPR002653	GO:0003677\|GO:0008270
	Lele15g0745	170	ProSiteProfiles	Zinc finger AN1-type profile.	105	151	IPR000058	GO:0008270
	Lele15g0745	170	Pfam	AN1-like Zinc finger	111	147	IPR000058	GO:0008270
	Lele15g0745	170	SUPERFAMILY	AN1-like Zinc finger	101	164	IPR035896	-
	Lele15g0745	170	Gene3D	-	1	64	-	-
	Lele15g0745	170	FunFam	Zinc finger AN1-type containing 6	87	166	-	-
	Lele15g0745	170	Gene3D	-	88	166	IPR035896	-
	Lele15g0745	170	SMART	A20_3	13	37	IPR002653	GO:0003677\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele15g0745	Lele-ChrLele15	4305374	4305886	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele15g0745	1	170	C2H2 Transcription Factor Family	AT3G52800	56.897	2.80e-55	170

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele06g0948	06	5831933	5835405	Lele15g0745	15	4305374	4305886	CCT
	Lele07g1121	07	6764995	6768392	Lele15g0745	15	4305374	4305886	CCT
	Lele08g0936	08	5879285	5882423	Lele15g0745	15	4305374	4305886	CCT
	Lele13g1670	13	25410177	25410605	Lele15g0745	15	4305374	4305886	hybridization
	Lele14g1614	14	23806368	23807882	Lele15g0745	15	4305374	4305886	hybridization