Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0719 ATGACATCGCCTGCAAGTACCGGAGGAGGGGGGCCAGGAAGTTTTGATTTGTTAGGGAAAAAGAAGAGGGGGAGGCCGAGAAAATATGATTCAGACGGGAAAACGAGGGTGACGACGACGTCGTATCAGGGTGCACCATCACAACAAGGCTTTTCTTTGTCCCCAACTTCACCTTCTGAATGCTCCTCCAAAAGGGGTCGAGGCAGACCACCTGGCTCCGGCAACTGGCAGCCCCTCGCATCTTTTGGTGAGTTGTTTGCAAACACAGCAGGTGGGGATTTCACACCTCATGTCGTTTCTGTTCATACTGGAGAGGGATCTTACTTGATGACTTCCATGCAGGATGTTGCCGGAAAAATCCTGTCATTTGCCCAGAAAGGTACTAGAGGAGTTTGCGTTCTCTCTGCCAATGGAGCTATATCTAATGTCACTCTACGGCGGCCTGCATTTTTCAATAATGAGCCCTTTAATTTTAATATTCAGGGTCGGTTCGAGATTTTGTCTCTGTCAGGGTCATACAGAGTGCCTGATAATGGTGCCATAAAAAGTCGAACCGGTGGGTTGAGTGTGTCACTGGCTGGCCCTGATGGTCGTGTGATCGGCGGTGGTGTTGCCGGTCTATTGACTGCTGCTAGCCCAATCCAAATTGTGATGGGAAGCTTCATGCCGTATAGTCACAAGGCACAGAAAAGAAAGTATCATCGTGAGAACACAGTGGCATCTCCAGTTTCTGGTGCAGATGCCGTGATGGCGGCTAGACCCATCTCACAGGCGAATCCTGATGGTGGTGAGAACTTTTTCACTCCCATGGCCCAGCAGCATGTTCAAGAACAAAGCCACAGAGAATCAGACAACATTACAAGCTGCGATAAACAGGGTTTAGATGCCACGCCCAATGCTTCTGATTGGCACGGCTTTGAAGAGTTGTCTGATCAGGGCCCAACCCCAGACATCAATATATCTCTGCCTGGGGAATAG 978 0.4969 MTSPASTGGGGPGSFDLLGKKKRGRPRKYDSDGKTRVTTTSYQGAPSQQGFSLSPTSPSECSSKRGRGRPPGSGNWQPLASFGELFANTAGGDFTPHVVSVHTGEGSYLMTSMQDVAGKILSFAQKGTRGVCVLSANGAISNVTLRRPAFFNNEPFNFNIQGRFEILSLSGSYRVPDNGAIKSRTGGLSVSLAGPDGRVIGGGVAGLLTAASPIQIVMGSFMPYSHKAQKRKYHRENTVASPVSGADAVMAARPISQANPDGGENFFTPMAQQHVQEQSHRESDNITSCDKQGLDATPNASDWHGFEELSDQGPTPDINISLPGE 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0719 325 MobiDBLite consensus disorder prediction 35 63 - -
Lele15g0719 325 SMART AT_hook_2 64 76 IPR017956 GO:0003677
Lele15g0719 325 SMART AT_hook_2 20 32 IPR017956 GO:0003677
Lele15g0719 325 Pfam AT hook motif 64 73 IPR017956 GO:0003677
Lele15g0719 325 Pfam AT hook motif 20 31 IPR017956 GO:0003677
Lele15g0719 325 Gene3D - 110 240 - -
Lele15g0719 325 ProSiteProfiles PPC domain profile profile. 91 246 IPR005175 -
Lele15g0719 325 PRINTS AT-hook-like domain signature 62 73 IPR017956 GO:0003677
Lele15g0719 325 PRINTS AT-hook-like domain signature 20 30 IPR017956 GO:0003677
Lele15g0719 325 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 228 - -
Lele15g0719 325 MobiDBLite consensus disorder prediction 1 78 - -
Lele15g0719 325 Pfam Plants and Prokaryotes Conserved (PCC) domain 114 221 IPR005175 -
Lele15g0719 325 MobiDBLite consensus disorder prediction 275 325 - -
Lele15g0719 325 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 18 280 IPR039605 GO:0003680
Lele15g0719 325 CDD DUF296 95 221 IPR005175 -
Lele15g0719 325 MobiDBLite consensus disorder prediction 18 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0719 Lele-ChrLele15 4153213 4155546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0719 18 246 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 46.091 3.35e-54 179