Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0711 ATGAGCGGCCTCGCCTGTGCGGTCAGCTGCCCGCAATTGTCCGGTTACTCTGCAAAATTTGAGACGTTGGTCGACATGGGGGCCTCGCTATCCACCCTGGGAACGAGCGGTGGTACCATCGGTCCGGGCCTAGGGGACATTCCCGAGAGTTGCGTGGCATTCGTTTTCCTGTATTTGACTCCGCCGGCGATATGCAATTTGGCGCGCCTGAATCGAGCTTTCCGTGGCGCGGCGTCTGCCGATTCCGTGTGGGAAGCAAAGTTGCCCCTTAATTATCAAGATCTGCTGGATTTAATGCCTCCCGAAAGGTACCAGAATTTATCCAAGAAGGACATATTTGCGCTACTGTCTCGACCAGTGCCATTCGATGATGGCAACAAGGAAGTTTGGCTGGACAGGATCACGGGAAAGGTTTGCATGTCCATATCGGCGAAAGCAATGGCGATTACTGGAATTGATGATCGCAGATACTGGAATTGGATTCCCACCGAAGAATCTAGGTTCCACATTTTTCCATTTCCTGCTGATGTTTATACTGTCTGCTTCAGGCTCCACCTTGGAAGATCTTACAGAAGGCTTGGAAGGCGAGTATGCAATTACGAGCACGCCCATGGTTGGGATATAAAACCAGTGAAATTTGAGTTGTCAACTTCAGATGGTCAGCAAGCATTGTGTGAGCACTGTTTGGATGAAACAGAATGTGCTGATGCATATGGCAATCAAAAGCGGGGATGCTGGGTGAATTACAAGGTGGGCGAATTCGTTGTCAGTGGAACTGAACCTACCACTGAAGTGAGGTTCTCCATGAAGCAGATCGATTGCACGCATTCCAAAGGTGGGCTTTGTGTAGATTCGGGAAAGCAAGGGAAGAATACTGTGCTGCTACGTAAAGAGGTGGAAACGATGCCATTGGAAAGGCGAAATGTTAGTTGTAACATTATAGACCTTTTGGTCAAAACTCAAATTCAAGTTGGTGGAGCTCAAGTACAAAGAGTTCATGTTGGAATGAGAGATTATAGACTTGCATGGAAAATGGAAGAATCATTAATGAAAGCATCCACACTTGAGTCTCACTTTGTGAATAGGTCAAGGCCCTCCAATCCCATCGTGGATCCTTGTTCTGGTAAGTTGGCTCTAGATGGCCCTGAACCACCCTGGCCTGCACTGCAACTGGGAATTGAATTGCGTTTCAATTTTTCAACCAGATTAAAACTAAACCCAGATCCCAATTTCACGCACAGAAAGTATCAGCTTTCTTCTCTGCTTCCCTGCCACTTTGGCTCATATAATAAGACACTTCACTTTGGGTTGGATTTGAAGCAAGAGACAGCAAAGCGTAGCCAGCTGACAATGGAATGGAATGCAAGCATCAGACCCTTTGTTCCGAGACCTGAGTCTTCCTTAAGTTTCCTCTACAACTATAACTGCAGCCCATATCCAGGAATGGAAGTGAAACATGCAGCAGCAGCAGCACAAGGGTTGGTTCCGGATATGGAGAAAATAAAGTATGGGAACCAGATGGAGAAGAAGAAGCGACTAACGAGCGAGCAGCTTGAGTCGCTGGAGAGGAGCTTCCAGGAGGAGATTAAGTTGGACCCTGATAGGAAGATGAAGCTCTCAAGGGAGCTAGGGCTTCAGCCTCGTCAGATTGCTGTATGGTTTCAAAATAGGCGTGCTAGGTGGAAGGCTAAGCAGCTCGAGAACTTGTATGATGCCCTCAAACAAGAATTCGATGCTATCTCTGAGGAAAAACAGAGGCTTCAAGAAGAGGTTGTGAAGTTGAAGGCAATACTGAGAGAGCAATCTTCAAAGACACAGGTTTCTGCAGGATATACAGAAGTTTCAGGGGAAGAAACAGTGGAAAGCACGTCAGAGGCAGTACTTCGAGGCTCGAACAAGCAGCAGGCACGGGGAATAACTACCCATCATCATCTGAATCAGCAGAATATGGCAGAAGCCCATTGTTCTTTCACTGTAGAGGATTATAGCACAGTTTCACTGCCCTACTGGCCGGCTCTTGTGCCTTATTATCCTTAG 2037 0.4732 MSGLACAVSCPQLSGYSAKFETLVDMGASLSTLGTSGGTIGPGLGDIPESCVAFVFLYLTPPAICNLARLNRAFRGAASADSVWEAKLPLNYQDLLDLMPPERYQNLSKKDIFALLSRPVPFDDGNKEVWLDRITGKVCMSISAKAMAITGIDDRRYWNWIPTEESRFHIFPFPADVYTVCFRLHLGRSYRRLGRRVCNYEHAHGWDIKPVKFELSTSDGQQALCEHCLDETECADAYGNQKRGCWVNYKVGEFVVSGTEPTTEVRFSMKQIDCTHSKGGLCVDSGKQGKNTVLLRKEVETMPLERRNVSCNIIDLLVKTQIQVGGAQVQRVHVGMRDYRLAWKMEESLMKASTLESHFVNRSRPSNPIVDPCSGKLALDGPEPPWPALQLGIELRFNFSTRLKLNPDPNFTHRKYQLSSLLPCHFGSYNKTLHFGLDLKQETAKRSQLTMEWNASIRPFVPRPESSLSFLYNYNCSPYPGMEVKHAAAAAQGLVPDMEKIKYGNQMEKKKRLTSEQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLENLYDALKQEFDAISEEKQRLQEEVVKLKAILREQSSKTQVSAGYTEVSGEETVESTSEAVLRGSNKQQARGITTHHHLNQQNMAEAHCSFTVEDYSTVSLPYWPALVPYYP 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0711 678 Gene3D - 503 569 - -
Lele15g0711 678 ProSiteProfiles 'Homeobox' domain profile. 504 564 IPR001356 GO:0003677
Lele15g0711 678 SUPERFAMILY Homeodomain-like 500 566 IPR009057 -
Lele15g0711 678 PANTHER F-BOX PROTEIN PP2-A15 35 285 - -
Lele15g0711 678 Coils Coil 504 524 - -
Lele15g0711 678 Pfam Homeobox associated leucine zipper 564 598 IPR003106 GO:0006355|GO:0043565
Lele15g0711 678 CDD homeodomain 509 565 IPR001356 GO:0003677
Lele15g0711 678 SMART HOX_1 507 568 IPR001356 GO:0003677
Lele15g0711 678 ProSitePatterns 'Homeobox' domain signature. 539 562 IPR017970 GO:0000981|GO:0006355
Lele15g0711 678 SUPERFAMILY F-box domain 42 112 IPR036047 GO:0005515
Lele15g0711 678 Pfam Phloem protein 2 137 169 IPR025886 -
Lele15g0711 678 Pfam Phloem protein 2 173 285 IPR025886 -
Lele15g0711 678 Pfam Homeodomain 509 562 IPR001356 GO:0003677
Lele15g0711 678 Coils Coil 556 604 - -
Lele15g0711 678 FunFam Putative homeobox-leucine zipper protein ATHB-51 506 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0711 Lele-ChrLele15 4101334 4111153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0711 451 594 Homeobox Transcription Factor Family AT5G03790 56.173 3.39e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele15g0711 PP2 3.2e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g0711 15 4101334 4111153 Lele05g1136 05 7091145 7094812 CCT
Lele15g0711 15 4101334 4111153 Lele06g0999 06 6196303 6200740 CCT
Lele15g0711 15 4101334 4111153 Lele07g1179 07 7117232 7121712 CCT
Lele15g0711 15 4101334 4111153 Lele08g0986 08 6256681 6261159 CCT
Lele13g1702 13 25604335 25607278 Lele15g0711 15 4101334 4111153 hybridization
Lele14g1644 14 24003211 24006751 Lele15g0711 15 4101334 4111153 hybridization