Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0703 ATGCGGTGTCTTCTTTCCGTGTTATTGGCCTTTGCCTCCTTATTGTTACCGGTATCGGTAGTATACAGCGGATTACCGAGGACGAGGAGTTTTCTGCCTCTTGAACGGGCTATTCCTCTAGGCCATCCGGTGGAACTGGAAGTACTCAGAGCACGTGACAGAGTCAGGCATGCTCGAATCTTGAAAGGTTGGCTAATGGGTTCTTCCGGTCTCTGTCCGTCTGTAATCTCTATATCCTTGCTGTACTTTACGAAGGTGAAGCTGGGCTCTCCTCCAAGAGAATTTAGAGTCCAGATTGACACTGGAAGTGACCTATTGTGGGTTTCTTGCAATGCTTGCAGTGATTGCCCTCGATCTAGTGACCTGGGGATTGAGCTCAATTTCTTTGATACAGCCGGCTCATCCACGGCCACGCCAGTTTCCTGCTCAGACCGAATATGTACTTCTGCTTTACGAAGTACTGGAACTGAATGCTCCCCGCAGATTAGTCGGTGCAGCTACACTTTCCAGTATGGAGATGGAAGTGGGACATCAGGTTATTACGTATCTGATCTGATGCATTTTGACATGATACTGGGACAATCTATGCTTGCAAACTCTTCCGCTAATGTTGTTTTCGGGTGTAGCACCTATCAATCTGGAGAATTGACAAAGACGGATAAAGCAGTTGATGGAATTTTTGGGTTTGGTCCTGGTGCTTTATCTGTTATCTCACAATTGTCATCACGAGGCATGACACCCGGGGTCTTCTCTCATTGCCTAAAAGGAGAAGGCAATGGAGGAGGCATATTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGCCCACTAGTCCCATCACAGCCCCATTACAACTTAAATCTTCTGAGCATTGCTGTTAATGGACAACCCCTCCCAATTGATTCGGCTGTGTTTGCAATATTTAACAACCAAGGAACTATAGTTGACTCTGGTACAACATTGGCATACTTTGTTCAAGAAGCATATGATCCTATTATTAATGCTATCACTACTGCTGTGTCACAATCAGCGAATCCCGTTATTTCAAAAGGAAACCAATGTTATCTGGTCTCAAGCAGTTTAAATTTTGCAGGCGGGGCTTCCATGGTCATAAAACCTGAACAGTACCTTATTCGTTATGGTTTCCTCGATGATTCTATAATGTGGTGCATTGGTTTCCAGAAGGCACAAGAAGGGGTTACAATTTTAGGAGATATTGTCCTAAAAGATAAAATTTTTGTCTATGACTTAGCTCATCAACGAATTGGGTGGACTAACTACGACTGTTCCTTGTCTGTAAATGTCTCCCTGACCACGAGCAAGGATGAGTACATCAATGCAAGAAAGCGGAGTGCAAGTAGCTCACAGATCGATACTCTCACCAATTTGCTACCCGATACACAAGAACATCAGGAAGGCGAGAGGGACTCCTCCACCGGCAGGTCACTCTGTTATGGCTATCTCAACTTCACCTCTCCTGAAGATGGTATATATGATTTCTTTTTCGATATTGCTATCTTTTTCGTAGTTCTTCCGACTGTTTTGATTCCTGGAAAATGTGGGCAACTCTCAGAAACAGGGAGCTCGCGTGCTAGTCGTGCTCTTGAGGTGAAGAATCATTCTAAACTGAATGGGAAAATGATGAGAGTCATGTGGTCACATCGCGACCCCGAAGCAAGAAAAAGTGGCATAGCGAACGTATTTGTTAAGGACTTAGCTGAACCTATAGATAATGCGGGATTATACGGGCTGTTTCAAAACTTCGGGAAAATTTTGTCCAGCAAAGTTGTCACGTTTGACGATGGGAAGAGCAAAGGGTATGGCTTCGTTCAATTTGAGTCAGAGGACTCTGCAAATGCTGCCATTGAAAAGTTGAATGGCTCCACTGTTAGAGATAAACAGATATATGTTGGTAAGTTTGTCAAAAAGAGTGAATGCGTCTTGCCTGGTCCTGATTCCAAGTTCACAAATTTGTTCCTGAAAAATTTGGACCCAGAGATTACAGAGGACCTTCTGCAGGAAAAGTTTGCCCATTTTGGCAACTTTGTTAATTTGGCTATTGCTAAGGACTACAATGGAGTATCAAAAGGTTTCGGCTTTGTGAACTATGATAATCCTGATGATGCTAAACGGGCAATGGAAACCATGCATGGATCACGACTAGGCTCGAAGATTATATATGTAGCCAGAGCACAGAAGAAGGCTGAGCGTGAAAATATCTTGCACCGTCACTTTGAGGAGAAACGTAAGGAGCAGATATTGAAATATAAGGGATCAAACATTTATGTGAAAAACATTGACGTTGATGTCAATGACGTAGAACTAAGAGATCATTTTAGTTCATGCGGTACGATAATATCTGCCAAAGTTATGCGGGACGACAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGTTTCTCCACTCCCGAGGAGGCCAATAAAGCTGTGGACTATTTCCATGGATGTGTGTTTCATCGTAAACCGCTATATGTTGCTATTGCTCAGAAGAAGGAAGATAGGCTAGCACGAGTAAACGTCCGTTATGCACAGGGAATAGCAGGACTAGCTGGACCTTCAACCGCTGTCATACATGGTGGATATCCTCCTTACTACTACGCAGCTACTGGTGTTGTTTCACAGCTGCCACCTCAAACCGGGCTAGTATATCAACCGCTGGGATTGAGGCCAGGATGGGGGCCTAACGGCTTTGCACTTCCTACCAGACCAGTTCCACAGGCTCTATTTTCTGTTCCTGCTACTTCTATGAGGCCGAACAGACAAAACAGGAGCAGGATGAATGGACAGGCAATTTCGCAGCGGAAAGCTTCCTTGGGTACTTTTATGCCACAACAGTCAATGGCCGTATCAAAAGAATCAACTACTCGGCAGTTCCATGAACTGCAGAGGACTGGGCAGACTAATTATGTGGCTAGAGGGCGCCAAGGTGAGATGGAAAAAGGATCTGAAGACCCATCCTATTGTTCTAACTCTATTGTTGGGAGTCAAGGGTCGAAAATGCTCCCTTGCATGCTTGCTGCTGCCACTCCTGAGCAGCAAAAGCAACTCCTTGGCGAGCATATTTACCCACTGATCCAGAAACTCAAGCATGGCAGCGAAGATTACTGGGATGCTCTTGGAGATGGGAATTGGAGAATTGCTGCTTCTCCTGGAATCTCCGATGTCTCTCTTTGCCAAGGTGGAAGAAGCTGTGCAGCTAATGACTTGACTGAAACTTCCGAAGACCCCGATCTTTGTTACATAATTTTTAACATGCATGAAATCTGCACTGTTTTCTTCCGCACTGAAATTTCCTCTGGAAGAAAAAAGCGGCTCATCATTCTCATCTATCGACTTTATCTCCGTCTTTCCCAGTGGTCTCTCTCTCACAGTACGCAGAATATAATGGGCAGCGGGAGTAGGAGAGAACGTTCTCGTAGGTCAAAGCGAAGGTCAGACGATTCTGAATCAGAATCACTTTCCCTGTCCGACGAGTCAGATAGCCGTGAATCGTCTCCCGAAAGGGGTTCTGACAAGCGCAGGAGAAGTAATCGTCATAGTCGTAGCAGTAGCCGTCGGTCGCGGCGTCGGAGCCCACCAGCCGAGCAGGACACCGATGATAGTGACGAACGGGGCCACAAGAAGAATAGGCCCTCGAGGACCATTACTGAAGAAGAAATACAGGAGTACCTGGCTAAAAAGGCTCAGAGCAAGGCAATGAAAGTTGCAAAAAAATTGAAGACTCATACAGTCTCAGGTTATTCGAACGATTCAAATCCATTTGGTGATTCTAATCTCAATGAGAAATTTGTTTGGAGAAAGAAAATAGAGCGTGATGTTTCTCAAGGTATTCCGCTTGATAATTTTTCAGTCAAGGCTGAGAAAAAGAGACAGAGAGAAAGGATGGCAGAAATTGAAAAGGTGAAGAGGAGAAGGGAAGAAAGGGCGCTTGATAAAGCACGACATGAAGAAGAAATGGCAATATTAGCCAGAGAACGTGCTCGAGCTGAATTCCAGGACTGGGAAAAAAAAGAAGAAGAGTTTCATTTTGACCAAAGCAAAGTCAGGTCAGAGATTAGATTGCGTGAAGGGCGTGCCAAGCCAATTGATGTCCTAACCAAACACCTGAGTGGATCAGATGACTTGGATATTGAAATAAATGAACCATACATGGTTTTCAAGGGCTTGACAGTGAAAGAAATGGAAGAGCTTCGCGATGACATCAAAATGCATCTTGACCTTGATAGGGAGACACTGACCCATGTGGAATACTGGGAGGCACTCCTTGTGGTATGTGATTGGGAACTTGCTGAAGCTCGTAAAAAGGATGCTCTTGATCGAGCTAGGGTGCGTGGGGAAGAACCACCTGCTGAGCTGCTGGCGGAAGAAAGAGGTATGCATGCCAGTGTAGAGGCAGAGGTGAAAAATCTCTTGCAAGGGAAGACTTGTGCTGAATTGGAGGCTATGCGAGTTCATATTGAGTCTCAAATGAGTAGCGGTACAGCGAAAGTGGTTGAGTATTGGGAAGCTGTTTTAAAACGCCTCCAAATATATAAGGCCAAGGCTTCTTTAAAGGAAATCCATGCTAAAATGTTACGTCAGCATTTGCAACGCCTTGAGCAACCATTGGAGGGTGAAGACAAGTTGGAGAATGCTTATGATACAAAATCTGAAGAGGAGGATATTCAGGATGATGTTAAAGTTCGATCAGCAGATGAAACTTATTCACCAGAACCCATGAAAGGAGAGGATCAAGAAGCTGAAGATGAGTCTGGATCCTTTTCACCAATACTGTTGCATGGTGATGAACATGAGGAAGCTATTGATCCTGAAGAGGACAGGGCTATCCTGGAGCATAAACGAATGGCTGTATTAGAGGAGCAGCAAAGACGAATCGAGGAAGCAATGGCGTCGAAGTCTGTTCCATCTGAAGATAATTTTGAGATGAAGGCTATGAAGGCTATGGGAGCTATGGAAGAAGGAGATGCACTTTTTGGCTCTGGAGCTGAAGTGAACCTAGATTCACAGGTTTATTGGTGGCATGACAAATACCGGCCCAGAAAGCCAAAATATTTTAACCGTGTTCACACTGGATATGAGTGGAACAAATATAACCAGACTCACTATGATCATGACAACCCGCCTCCAAAGATTGTACAGGGATATAAATTTAATATTTTCTATCCAGACCTTGTAGACAAGACCAAGGCTCCAACCTACACTATTGAGAAGGATGGCAGCAATGGTGAGACATGCATCATACGATTCCATGCGGGGCCGCCATATGAGGACATAGCTTTCCGAATTGTGAATAAAGAATGGGAATATTCTCACAAGAAAGGCTTTAAGTGCACATTTGAGCGTGGAATTTTACATGTGTACTTTAACTTCAAGCGCTACCGCTACCGCAGATAA 5418 0.445 MRCLLSVLLAFASLLLPVSVVYSGLPRTRSFLPLERAIPLGHPVELEVLRARDRVRHARILKGWLMGSSGLCPSVISISLLYFTKVKLGSPPREFRVQIDTGSDLLWVSCNACSDCPRSSDLGIELNFFDTAGSSTATPVSCSDRICTSALRSTGTECSPQISRCSYTFQYGDGSGTSGYYVSDLMHFDMILGQSMLANSSANVVFGCSTYQSGELTKTDKAVDGIFGFGPGALSVISQLSSRGMTPGVFSHCLKGEGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLLSIAVNGQPLPIDSAVFAIFNNQGTIVDSGTTLAYFVQEAYDPIINAITTAVSQSANPVISKGNQCYLVSSSLNFAGGASMVIKPEQYLIRYGFLDDSIMWCIGFQKAQEGVTILGDIVLKDKIFVYDLAHQRIGWTNYDCSLSVNVSLTTSKDEYINARKRSASSSQIDTLTNLLPDTQEHQEGERDSSTGRSLCYGYLNFTSPEDGIYDFFFDIAIFFVVLPTVLIPGKCGQLSETGSSRASRALEVKNHSKLNGKMMRVMWSHRDPEARKSGIANVFVKDLAEPIDNAGLYGLFQNFGKILSSKVVTFDDGKSKGYGFVQFESEDSANAAIEKLNGSTVRDKQIYVGKFVKKSECVLPGPDSKFTNLFLKNLDPEITEDLLQEKFAHFGNFVNLAIAKDYNGVSKGFGFVNYDNPDDAKRAMETMHGSRLGSKIIYVARAQKKAERENILHRHFEEKRKEQILKYKGSNIYVKNIDVDVNDVELRDHFSSCGTIISAKVMRDDKGISKGFGFVCFSTPEEANKAVDYFHGCVFHRKPLYVAIAQKKEDRLARVNVRYAQGIAGLAGPSTAVIHGGYPPYYYAATGVVSQLPPQTGLVYQPLGLRPGWGPNGFALPTRPVPQALFSVPATSMRPNRQNRSRMNGQAISQRKASLGTFMPQQSMAVSKESTTRQFHELQRTGQTNYVARGRQGEMEKGSEDPSYCSNSIVGSQGSKMLPCMLAAATPEQQKQLLGEHIYPLIQKLKHGSEDYWDALGDGNWRIAASPGISDVSLCQGGRSCAANDLTETSEDPDLCYIIFNMHEICTVFFRTEISSGRKKRLIILIYRLYLRLSQWSLSHSTQNIMGSGSRRERSRRSKRRSDDSESESLSLSDESDSRESSPERGSDKRRRSNRHSRSSSRRSRRRSPPAEQDTDDSDERGHKKNRPSRTITEEEIQEYLAKKAQSKAMKVAKKLKTHTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVSQGIPLDNFSVKAEKKRQRERMAEIEKVKRRREERALDKARHEEEMAILARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRAKPIDVLTKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMHLDLDRETLTHVEYWEALLVVCDWELAEARKKDALDRARVRGEEPPAELLAEERGMHASVEAEVKNLLQGKTCAELEAMRVHIESQMSSGTAKVVEYWEAVLKRLQIYKAKASLKEIHAKMLRQHLQRLEQPLEGEDKLENAYDTKSEEEDIQDDVKVRSADETYSPEPMKGEDQEAEDESGSFSPILLHGDEHEEAIDPEEDRAILEHKRMAVLEEQQRRIEEAMASKSVPSEDNFEMKAMKAMGAMEEGDALFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR 1805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0703 1805 Coils Coil 1296 1340 - -
Lele15g0703 1805 Pfam Xylanase inhibitor N-terminal 82 267 IPR032861 -
Lele15g0703 1805 CDD pepsin_A_like_plant 82 431 IPR034161 -
Lele15g0703 1805 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 567 644 IPR000504 GO:0003723
Lele15g0703 1805 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 761 838 IPR000504 GO:0003723
Lele15g0703 1805 Pfam Cactus-binding C-terminus of cactin protein 1681 1805 IPR019134 GO:0005515
Lele15g0703 1805 ProSiteProfiles Peptidase family A1 domain profile. 82 427 IPR033121 -
Lele15g0703 1805 FunFam Polyadenylate-binding protein 744 852 - -
Lele15g0703 1805 Pfam Conserved mid region of cactin 1332 1529 IPR018816 -
Lele15g0703 1805 FunFam Aspartic proteinase-like protein 2 269 438 - -
Lele15g0703 1805 Gene3D - 1003 1044 - -
Lele15g0703 1805 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 658 735 IPR000504 GO:0003723
Lele15g0703 1805 Gene3D Acid Proteases 269 437 IPR021109 -
Lele15g0703 1805 MobiDBLite consensus disorder prediction 1543 1589 - -
Lele15g0703 1805 MobiDBLite consensus disorder prediction 1196 1227 - -
Lele15g0703 1805 Gene3D Acid Proteases 74 268 IPR021109 -
Lele15g0703 1805 FunFam Polyadenylate-binding protein 649 743 - -
Lele15g0703 1805 FunFam Polyadenylate-binding protein 561 648 - -
Lele15g0703 1805 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 763 831 IPR000504 GO:0003723
Lele15g0703 1805 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 569 637 IPR000504 GO:0003723
Lele15g0703 1805 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 660 728 IPR000504 GO:0003723
Lele15g0703 1805 SUPERFAMILY PABC (PABP) domain 1009 1038 IPR036053 GO:0003723
Lele15g0703 1805 Gene3D - 474 566 IPR012677 -
Lele15g0703 1805 MobiDBLite consensus disorder prediction 1133 1227 - -
Lele15g0703 1805 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 1198 1805 - -
Lele15g0703 1805 SMART CactinC_cactus_3 1681 1805 - -
Lele15g0703 1805 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
Lele15g0703 1805 PRINTS Pepsin (A1) aspartic protease family signature 403 418 IPR001461 GO:0004190|GO:0006508
Lele15g0703 1805 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190|GO:0006508
Lele15g0703 1805 SMART rrm1_1 568 640 IPR000504 GO:0003723
Lele15g0703 1805 SMART rrm1_1 762 834 IPR000504 GO:0003723
Lele15g0703 1805 SMART rrm1_1 659 731 IPR000504 GO:0003723
Lele15g0703 1805 Pfam Xylanase inhibitor C-terminal 285 427 IPR032799 -
Lele15g0703 1805 Gene3D - 567 649 IPR012677 -
Lele15g0703 1805 MobiDBLite consensus disorder prediction 1543 1592 - -
Lele15g0703 1805 Gene3D - 650 746 IPR012677 -
Lele15g0703 1805 Gene3D - 747 847 IPR012677 -
Lele15g0703 1805 CDD RRM2_I_PABPs 565 641 IPR045305 -
Lele15g0703 1805 SUPERFAMILY RNA-binding domain, RBD 657 840 IPR035979 GO:0003676
Lele15g0703 1805 SUPERFAMILY Acid proteases 78 434 IPR021109 -
Lele15g0703 1805 MobiDBLite consensus disorder prediction 1148 1181 - -
Lele15g0703 1805 SUPERFAMILY RNA-binding domain, RBD 533 646 IPR035979 GO:0003676
Lele15g0703 1805 CDD RRM4_I_PABPs 760 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0703 Lele-ChrLele15 4046444 4063908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0703 567 842 Eukaryotic Initiation Factors Gene Family AT2G36660 34.286 6.14e-39 153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1000 06 6203040 6207861 Lele15g0703 15 4046444 4063908 CCT
Lele07g1180 07 7125059 7129507 Lele15g0703 15 4046444 4063908 CCT
Lele08g0987 08 6263255 6267838 Lele15g0703 15 4046444 4063908 CCT
Lele05g1136 05 7091145 7094812 Lele15g0703 15 4046444 4063908 CCT
Lele13g1713 13 25655055 25659144 Lele15g0703 15 4046444 4063908 hybridization
Lele14g1656 14 24060404 24061157 Lele15g0703 15 4046444 4063908 hybridization