Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0700 ATGAGCATTATCTTGTTCACATACAGGGGATCACCCGACAGACCATCTCAGCCACGCCCTCAGGAAGGTTCTACTTCTACACAGTCCTGGTACCCTCCGTCTGTAGTGGCCTCACCCAGTTCTTCTAGGCCTACAACACCAAGTGGCACTTCCTCAAGCAGCTATGGTTCACAGAGACCTACAGAAAGATTGCAGTCTCCTTCACATGTTTCTCCCACCGAAGCTGCAGGAGTTATTGCTCATCTGAAGGACAAAAATGCTGATGAGCTACGGAAGCTTTTATCTGACAAAGATGCATACCAGCAATTTCTACTTTCGCTTGATCAGGTCAAAATTCAAAACAATTTGAAAGACGAACTTTGCAAGGAGACTACACAGCTTGCAGAGGAAAATCTGCAAAAGGAACCTCGTATTATGGAACTTAAAAATCAGTGTAGAATAATTCGGACAACTGAGTTAGCCACTGCTCAAGAGAAACTAAGTGAACTTGAGAAGCAGAAAGAACAAGCATTGAAGTTCAGTTCTCCAGCTTCCCTTCTCCAACAGCTTCAAGAGGCTATGAGTAAGACGGAAGAGGAATCTGAAAATCTGCACCAGCAACTCCTTGATAGAGAAATTGATCTTGGAGCTTTCTTGCAGAAATACAAGAAGCTTCGTACCAATCACCACAAGAGAGCGCTTGTGCATCTTGCGGCTAGAACATCAAGTGCATGA 714 0.444 MSIILFTYRGSPDRPSQPRPQEGSTSTQSWYPPSVVASPSSSRPTTPSGTSSSSYGSQRPTERLQSPSHVSPTEAAGVIAHLKDKNADELRKLLSDKDAYQQFLLSLDQVKIQNNLKDELCKETTQLAEENLQKEPRIMELKNQCRIIRTTELATAQEKLSELEKQKEQALKFSSPASLLQQLQEAMSKTEEESENLHQQLLDREIDLGAFLQKYKKLRTNHHKRALVHLAARTSSA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0700 237 MobiDBLite consensus disorder prediction 17 72 - -
Lele15g0700 237 MobiDBLite consensus disorder prediction 1 72 - -
Lele15g0700 237 Coils Coil 153 173 - -
Lele15g0700 237 Pfam Modifier of rudimentary (Mod(r)) protein 83 226 IPR009851 -
Lele15g0700 237 Gene3D Helix hairpin bin 162 230 IPR029012 -
Lele15g0700 237 Coils Coil 180 200 - -
Lele15g0700 237 SUPERFAMILY Endosomal sorting complex assembly domain 176 225 IPR037202 -
Lele15g0700 237 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 17 235 - -
Lele15g0700 237 ProSiteProfiles VPS37 C-terminal domain profile. 157 237 IPR009851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0700 Lele-ChrLele15 4034432 4036879 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1005 06 6233712 6235953 Lele15g0700 15 4034432 4036879 CCT
Lele08g0990 08 6287745 6289918 Lele15g0700 15 4034432 4036879 CCT
Lele13g1716 13 25685071 25689694 Lele15g0700 15 4034432 4036879 hybridization
Lele14g1661 14 24081153 24084174 Lele15g0700 15 4034432 4036879 hybridization