Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0683 ATGGAGGATATCATTCGAGAGCAAGTTATGGTGGCGTGCAAGGATCATGCACAAATCATGAAGGGCAAGCGTACCAAGCGTCATAGGCCACCCTCCCCGCTAAGGCTAGCCATAGCCGTGCCTTGTACCACCGCCAGCAGCAACGAGCTCTGTTCCGGCGGCTTCGACGTCGCGTACACGTCCTCCTCCGAATTGAGGGATAGCACGCCGTCGACGACGACGCCCCCGGAGGAAGAGGAGGACATGGCCAATTGTTTGATTCTTTTGGGTCGAGGCAAATTCTCGCACCCTAAGGATGGCGCATACCTTTACCAGTGCAAGACTTGTGACCGAGGCTTCCCTTCGTTCCGGGCGCTCGGCGGACACAGGGCCAGGCACAAGAAGATGAAGCCCAACCCGGAAGGTCACGACGATTGCTGCACCAGCACCGCTCTCTCCTTGCAATTATCGAGTAGCAGGGTTTCTTTTTATGGCGCTAAATCATCGCCCAAGGTTCACGAGTGTTCCATTTGTGGGGCCGAGTTCTCTTCTGGGCAAGCCTTGGGGGGTCACATGAGAAGGCACAGAACTTTGGGGAACGCCTCTTCAACTGCAACTACCATTATTACCGGCAGCCCAAAGAAACCCAGAAACGTCTTCAAGTGGGACTTGAATCTTCCTGCACCTCATGAAGATCATGATCATTCCGAATCCAAGTTTCCCTTTCGCTCCAAAGACTCTGTCCTCGTCTTCTCGGCGTCTCCTTTGGGGGATTGTCATTATTGA 765 0.5412 MEDIIREQVMVACKDHAQIMKGKRTKRHRPPSPLRLAIAVPCTTASSNELCSGGFDVAYTSSSELRDSTPSTTTPPEEEEDMANCLILLGRGKFSHPKDGAYLYQCKTCDRGFPSFRALGGHRARHKKMKPNPEGHDDCCTSTALSLQLSSSRVSFYGAKSSPKVHECSICGAEFSSGQALGGHMRRHRTLGNASSTATTIITGSPKKPRNVFKWDLNLPAPHEDHDHSESKFPFRSKDSVLVFSASPLGDCHY 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0683 254 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Lele15g0683 254 SMART c2h2final6 104 126 IPR013087 -
Lele15g0683 254 SMART c2h2final6 166 188 IPR013087 -
Lele15g0683 254 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Lele15g0683 254 SUPERFAMILY beta-beta-alpha zinc fingers 103 188 IPR036236 -
Lele15g0683 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 188 IPR013087 -
Lele15g0683 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Lele15g0683 254 Pfam C2H2-type zinc finger 165 189 - -
Lele15g0683 254 Pfam C2H2-type zinc finger 104 128 - -
Lele15g0683 254 Gene3D Classic Zinc Finger 102 188 - -
Lele15g0683 254 PANTHER ZINC FINGER PROTEIN ZAT5 29 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0683 Lele-ChrLele15 3936842 3937606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0683 9 254 C2H2 Transcription Factor Family AT5G03510 40.461 2.19e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele15g0683 zf-C2H2_6 9.5e-13 CL0361