Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0625 ATGCAAGTGATGTCTGGTGACCCTTTCTCCTTATCCGCTTCCATCGGATGCTATGCTCCACAACAAAACCCAAACCCTAACCCTAAACCTAATCCCAAGAAGAAAAGGAATCTCCCAGGAACACCAGATCCAGATGCGGAGGTCATCGCGCTTTCACCGAAAACTCTCATGGCAACCAACAGGTTCATTTGCGAAATATGCAACAAAGGGTTTCAGAGAGATCAGAACCTTCAGCTTCACCGGAGGGGTCACAACCTTCCATGGAAGTTACGACAAAGGTCCAACAAAGAAGTTCGAAAGAAGGTTTACATCTGCCCGGAGAAGACCTGCGTCCACCATGACCCATCCCGAGCACTGGGCGACCTCACTGGCATAAAGAAGCATTTTAGCAGAAAACATGGGGAGAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATACGCAGTCCAATCCGACTGGAAAGCTCACACCAAGACCTGTGGAACAAGAGAATACAAGTGCGATTGTGGGAACCTATTCTCCAGAAAGGACAGCTTCATCACACACAGAGCTTTCTGCGATGCCTTAGCGGAAGAAAGTGCGAGACTCACCTCGGTTGCTACAGCAACAAATCTGAATTTCAAGAACGAAGGGAACACGATGAGCTCACAACCTAATCTGGGACTTGAAAACAACACACAGATAATTTCTCAATTCGGCTCGCATGGATTTCGTGCAGATTTTAATGGAATGGGAATGGTTGCGGACCAGCAAAGAGCGAGCTTATCAATGTGGTTGAACCAGGTAAATAACAATGGTCTTGATGTTGGAGGGCTATTTGGATCTTCAAGTTGTTCTTCAGGTTTGGGTGAGCATATGGCACAAATGACGAGCCAAGCTAATCATAGTGCTTTTGGTGGGTCTTGTAATTTTGGAATGCCTGCTTCGAATTCAACAAATGCGGGAGTTTTACTATCAAGTGGGAAAAGGGGTGAAGCAATGTCAAAGCGAGCTTCTCCGATGTCAGCCACTGCTTTGCTGCAGAAAGCAGCTCAGATGGGTTCCACTAGAAGTAGCAACGACAACGACAACAACAACAACAACAATTCCTCTATTTTCAGTGGCACTTTGGGAGTGATGTCCTCGTCTTCTAATTCCTACGCGACCACTAATCTCAACGACGACGACAAGAATAACAACGCCAACAATAATCCACAGAATTTCAGTTCAACTAGCAGTACTGCCGAACCAGTGCTAACAGATAACAACTTCAGCTCGTTCACGCATGCATCGAACAGTACTAATCTTGACCAGCTCTTGATGCAGACCAGGACAAAGCAAAGTGAACAACAAGTGCAATTGAAGCTTTACCCAGGTGGTTCATCAGAACATAATTTAACAAGAGATTTTCTCGGCATGGCCGGTGACGGTGGCGCCGGAGGAGCTGGGACTCCTCCCCCGTTTCTGCCGCAAGAGCTGGCAAAGTTCGTGTCCATAGGCTCACCCATGGGTTTAACCCAATTTACTGCCAACCTCTGA 1518 0.4671 MQVMSGDPFSLSASIGCYAPQQNPNPNPKPNPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGNLFSRKDSFITHRAFCDALAEESARLTSVATATNLNFKNEGNTMSSQPNLGLENNTQIISQFGSHGFRADFNGMGMVADQQRASLSMWLNQVNNNGLDVGGLFGSSSCSSGLGEHMAQMTSQANHSAFGGSCNFGMPASNSTNAGVLLSSGKRGEAMSKRASPMSATALLQKAAQMGSTRSSNDNDNNNNNNSSIFSGTLGVMSSSSNSYATTNLNDDDKNNNANNNPQNFSSTSSTAEPVLTDNNFSSFTHASNSTNLDQLLMQTRTKQSEQQVQLKLYPGGSSEHNLTRDFLGMAGDGGAGGAGTPPPFLPQELAKFVSIGSPMGLTQFTANL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0625 505 MobiDBLite consensus disorder prediction 334 417 - -
Lele15g0625 505 Gene3D Classic Zinc Finger 40 113 - -
Lele15g0625 505 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Lele15g0625 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Lele15g0625 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 471 IPR031140 -
Lele15g0625 505 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Lele15g0625 505 MobiDBLite consensus disorder prediction 14 45 - -
Lele15g0625 505 MobiDBLite consensus disorder prediction 315 417 - -
Lele15g0625 505 SMART c2h2final6 138 158 IPR013087 -
Lele15g0625 505 SMART c2h2final6 103 133 IPR013087 -
Lele15g0625 505 SMART c2h2final6 62 84 IPR013087 -
Lele15g0625 505 Gene3D Classic Zinc Finger 114 195 - -
Lele15g0625 505 FunFam protein indeterminate-domain 12-like 41 109 - -
Lele15g0625 505 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Lele15g0625 505 Pfam Zinc-finger double-stranded RNA-binding 62 84 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0625 Lele-ChrLele15 3648469 3650318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0625 23 380 IDZ Gene Family AT3G50700 55.432 5.85e-120 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele15g0625 zf-C2H2_jaz 7.4e-05 CL0361