Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0621 ATGCTACTGAAGGCCAATGCATTTGTTTCTGGCTTCAATCTCATTCTGAAGCAAAAGCCTATTAACTTCTTTGTGTGTAGTTCGTTTTCTTTCTATTCGGTTCACAATATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACAATCACCCTCGAGGTGGAAAGCTCGGATACTATAGACAACGTGAAGGCGAAGATCCAAGATAAGGAAGGTATCCCTCCGGATCAGCAGCGGCTCATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGTACTCTCGCCGATTACAACATTCAGAAGGAATCGACGCTTCACCTCGTTCTCCGATTGAGGGGAGGTATGCAGATCTTCGTCAAAACCCTAACCGGAAAGACGATCACTCTTGAAGTGGAGAGCTCAGACACCATTGATAATGTTAAAGCCAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAGCAGAGGCTCATCTTTGCTGGTAAGCAATTAGAAGATGGCCGCACCCTAGCCGATTACAACATACAGAAAGAATCGACCCTTCATCTTGTTCTTCGATTGAGGGGTGGTATGCAGATCTTTGTCAAAACCTTGACGGGAAAGACCATCACTCTTGAGGTGGAAAGTTCCGATACGATCGATAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTCATCTTTGCCGGAAAGCAATTGGAGGATGGCCGAACCCTCGCTGATTACAACATACAGAAAGAATCAACCCTTCACCTTGTCCTTCGGTTGAGGGGTGGAATGCAGATCTTTGTCAAGACATTGACTGGGAAGACCATTACTTTGGAGGTCGAGAGTTCCGATACGATCGATAATGTCAAAGCCAAGATCCAGGATAAGGAAGGTATTCCCCCGGATCAGCAGAGACTTATCTTCGCTGGTAAACAATTGGAAGACGGACGTACACTTGCCGATTACAATATCCAGAAGGAATCTACGCTTCACCTTGTGCTTCGTCTTCGTGGAGGAATGCAGATTTTCGTCAAGACCCTGACGGGGAAAACCATCACTTTGGAAGTTGAGAGTTCCGACACTATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATCCCAACTGATCAGCAGCGTTTGATCTTCGCTGGAAAGCAATTGGAGGATGGTAGGACCCTTGCGGATTATAACATCCAGAAAGAGTCAACTCTTCATCTAGTGCTTCGTCTGCGTGGAGGTATGCAGATTTTCGTTAAGACGCTCACTGGAAAGACAATTACCTTGGAAGTCGAGAGCTCGGATACAATTGATAATGTGAAGGCGAAAATTCAGGATAAGGAGGGGATCCCACCGGACCAACAACGTCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGGCGTACGCTCGCTGATTATAACATTCAAAAGGAATCTACCCTTCATCTTGTCCTCCGTCTTCGTGGTGGGGATATCTAA 1485 0.4721 MLLKANAFVSGFNLILKQKPINFFVCSSFSFYSVHNMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPTDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDI 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0621 494 ProSiteProfiles Ubiquitin domain profile. 113 188 IPR000626 GO:0005515
Lele15g0621 494 FunFam Polyubiquitin 3 189 264 - -
Lele15g0621 494 ProSiteProfiles Ubiquitin domain profile. 189 264 IPR000626 GO:0005515
Lele15g0621 494 CDD Ubl_ubiquitin 417 492 - -
Lele15g0621 494 ProSiteProfiles Ubiquitin domain profile. 265 340 IPR000626 GO:0005515
Lele15g0621 494 SMART ubq_7 265 336 IPR000626 GO:0005515
Lele15g0621 494 SMART ubq_7 341 412 IPR000626 GO:0005515
Lele15g0621 494 SMART ubq_7 37 108 IPR000626 GO:0005515
Lele15g0621 494 SMART ubq_7 417 488 IPR000626 GO:0005515
Lele15g0621 494 SMART ubq_7 113 184 IPR000626 GO:0005515
Lele15g0621 494 SMART ubq_7 189 260 IPR000626 GO:0005515
Lele15g0621 494 ProSiteProfiles Ubiquitin domain profile. 417 492 IPR000626 GO:0005515
Lele15g0621 494 FunFam Polyubiquitin 3 113 188 - -
Lele15g0621 494 ProSitePatterns Ubiquitin domain signature. 215 240 IPR019954 -
Lele15g0621 494 SUPERFAMILY Ubiquitin-like 188 264 IPR029071 -
Lele15g0621 494 SUPERFAMILY Ubiquitin-like 112 188 IPR029071 -
Lele15g0621 494 CDD Ubl_ubiquitin 37 112 - -
Lele15g0621 494 Gene3D - 189 264 - -
Lele15g0621 494 Gene3D - 341 417 - -
Lele15g0621 494 Gene3D - 265 340 - -
Lele15g0621 494 Gene3D - 113 188 - -
Lele15g0621 494 Gene3D - 32 112 - -
Lele15g0621 494 Gene3D - 418 494 - -
Lele15g0621 494 CDD Ubl_ubiquitin 341 416 - -
Lele15g0621 494 ProSitePatterns Ubiquitin domain signature. 443 468 IPR019954 -
Lele15g0621 494 ProSitePatterns Ubiquitin domain signature. 63 88 IPR019954 -
Lele15g0621 494 FunFam Polyubiquitin 3 417 492 - -
Lele15g0621 494 CDD Ubl_ubiquitin 189 264 - -
Lele15g0621 494 ProSitePatterns Ubiquitin domain signature. 139 164 IPR019954 -
Lele15g0621 494 ProSitePatterns Ubiquitin domain signature. 291 316 IPR019954 -
Lele15g0621 494 SUPERFAMILY Ubiquitin-like 263 340 IPR029071 -
Lele15g0621 494 SUPERFAMILY Ubiquitin-like 340 416 IPR029071 -
Lele15g0621 494 SUPERFAMILY Ubiquitin-like 416 492 IPR029071 -
Lele15g0621 494 Pfam Ubiquitin family 191 262 IPR000626 GO:0005515
Lele15g0621 494 Pfam Ubiquitin family 39 110 IPR000626 GO:0005515
Lele15g0621 494 Pfam Ubiquitin family 115 186 IPR000626 GO:0005515
Lele15g0621 494 Pfam Ubiquitin family 343 414 IPR000626 GO:0005515
Lele15g0621 494 Pfam Ubiquitin family 419 490 IPR000626 GO:0005515
Lele15g0621 494 Pfam Ubiquitin family 267 338 IPR000626 GO:0005515
Lele15g0621 494 SUPERFAMILY Ubiquitin-like 34 112 IPR029071 -
Lele15g0621 494 PRINTS Ubiquitin signature 47 67 IPR019956 -
Lele15g0621 494 PRINTS Ubiquitin signature 89 110 IPR019956 -
Lele15g0621 494 PRINTS Ubiquitin signature 68 88 IPR019956 -
Lele15g0621 494 ProSitePatterns Ubiquitin domain signature. 367 392 IPR019954 -
Lele15g0621 494 CDD Ubl_ubiquitin 113 188 - -
Lele15g0621 494 FunFam Polyubiquitin 3 265 340 - -
Lele15g0621 494 ProSiteProfiles Ubiquitin domain profile. 341 416 IPR000626 GO:0005515
Lele15g0621 494 FunFam Polyubiquitin 3 341 416 - -
Lele15g0621 494 PANTHER UBIQUITIN 265 344 - -
Lele15g0621 494 CDD Ubl_ubiquitin 265 340 - -
Lele15g0621 494 FunFam Polyubiquitin 3 37 112 - -
Lele15g0621 494 ProSiteProfiles Ubiquitin domain profile. 37 112 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0621 Lele-ChrLele15 3622652 3625372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0621 417 494 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.718 1.09e-46 157