Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0611 ATGAAGCTGTCGCGGGCTTCTGGTGCGGTGAGCAAGCCTTGGTGTCTTCAAATAATGAACAACGGCTCCTCTTTTCTGTTTTCCGGCATTCGCTTCGACACAAAAAGGTTCGGCGGCGATATTGCCAAGTTCGAGAAAAAAGAAAAAGATCATTCCGTGGAGGTTTCGAGCTCGTTTGAAATTGACAAAGCAGAACCAGTTGGTGGAAAAGCTCCTGCGAAGAAGAGGAAGCGGAAGGGAGTGGTTTCAGAAACAGTTGAGGGATTCAATGTCTTTAAGAAGTCCAAATCAGCGGTAATTCAACCTAAAGATGAAGATAAAGCTGTGGTTGAGTCCGTTCAGCAGACAAAAGAACAAAACAGGCAACTTGAGCGGGATGCTCTATTCAGGAAGAGGCACAACATTCATGTGTCTGGGTACAATGTCCCATCCCCACTTCAAAATTTTGAGGAGTTGAGGTCAAGATATAAATGTGAACCATATATGTTACGCAATTTGGCAGAACTCGGATTCAGAGAACCAACACCAATCCAAAGACAAGCTATACCTGTTCTTTTACATGATCGTGAATGCTTTGCCTGTGCCCCAACTGGCTCTGGGAAAACCTTGGCCTTTGTGTGTCCTATGCTTATAAAGCTTAAGGATCCTTTGAAAAATGGCATTCGAGCTGTTATCCTTTGCCCCACTCGTGAATTATCTTCCCAAACTTACAGAGAGTGCAAACGGCTGGCTAAAGGCAAAAAGTTCCGTATTAAGTTAATGACTAAAGAGCTAGCAAGAAATGGTGATTTTGCTAAATTTTCATGTGATATACTCATATCCACACCACTTCGATTACACTCAACCATCCGGAGGAAAAAGGTGGACCTCAGCAGAGTTGAGTATCTTGTCCTAGATGAATCCGATAAGCTTTTTGAGCTTGGGTTATTCGAGCAGATTGATTCTGTTATTCAAGCATGTTCAAACCCTTCAATAATACGCTCACTTTTCAGTGCCACTTTACCTGATTCTGTTGAGGATCGTGCTCGTGAGCTTATGCATGATGCCATTAGAGTTATCGTTGGCAGAAAGAATATGGCTTCTGAAACAATAAAGCAAAAATTAGTTTTTACTGGAAGTGAAGAGGGGAAACTTATGGCAATTCGCCAAAGCTTTGCAGAGAGTTTAAATCCCCCAATATTGGTCTTTGTCCAAAGCAAGGAGCGAGCAAAAGAACTCTATGGTGAACTTCAATTCGATAACCTCAGAGTTGGTGTTATCCATTCTGATTTGTCTCAAAAGGAGCGAGAAGATGCTGTTGATAATTTCAGAGCGGGAAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCTCGAGGCATGGATTTCAAAGCTGTGAAATGTGTGATTAATTATGATTTTCCAGATTCTGCCGCTGCTTACATCCATAGAATTGGTCGTTCTGGGAGAGCAGGGAGGGCTGGAGAAGCTATAACATTTTATTCGGAGGAAGACATGCCCTTGCTGCGTAATATAGCCAATCTGATGGCAACATCAGGTTGTGAAGTTCCATCTTTTCTCCTGGAGCTTCCCAAAAAGAAGTGGAAGAAACACCGCCCCAAAAGAGATTCTATCTCTACCAAACCCAAAATATAA 1635 0.4245 MKLSRASGAVSKPWCLQIMNNGSSFLFSGIRFDTKRFGGDIAKFEKKEKDHSVEVSSSFEIDKAEPVGGKAPAKKRKRKGVVSETVEGFNVFKKSKSAVIQPKDEDKAVVESVQQTKEQNRQLERDALFRKRHNIHVSGYNVPSPLQNFEELRSRYKCEPYMLRNLAELGFREPTPIQRQAIPVLLHDRECFACAPTGSGKTLAFVCPMLIKLKDPLKNGIRAVILCPTRELSSQTYRECKRLAKGKKFRIKLMTKELARNGDFAKFSCDILISTPLRLHSTIRRKKVDLSRVEYLVLDESDKLFELGLFEQIDSVIQACSNPSIIRSLFSATLPDSVEDRARELMHDAIRVIVGRKNMASETIKQKLVFTGSEEGKLMAIRQSFAESLNPPILVFVQSKERAKELYGELQFDNLRVGVIHSDLSQKEREDAVDNFRAGKTWVLIATDVVARGMDFKAVKCVINYDFPDSAAAYIHRIGRSGRAGRAGEAITFYSEEDMPLLRNIANLMATSGCEVPSFLLELPKKKWKKHRPKRDSISTKPKI 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0611 544 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 110 512 - -
Lele15g0611 544 SMART ultradead3 170 367 IPR014001 -
Lele15g0611 544 CDD DEADc_DDX52 163 355 IPR044764 GO:0003724|GO:0005524|GO:0030490
Lele15g0611 544 Gene3D - 360 540 IPR027417 -
Lele15g0611 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 497 IPR027417 -
Lele15g0611 544 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 352 IPR014001 -
Lele15g0611 544 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Lele15g0611 544 Pfam DEAD/DEAH box helicase 175 339 IPR011545 GO:0003676|GO:0005524
Lele15g0611 544 SMART helicmild6 404 485 IPR001650 -
Lele15g0611 544 Gene3D - 126 359 IPR027417 -
Lele15g0611 544 Pfam Helicase conserved C-terminal domain 387 485 IPR001650 -
Lele15g0611 544 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 524 IPR001650 -
Lele15g0611 544 CDD SF2_C_DEAD 364 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0611 Lele-ChrLele15 3578706 3584588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0611 162 523 Eukaryotic Initiation Factors Gene Family AT3G19760 32.418 7.77e-58 196