Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0604 ATGGCTGAAGCTCCGGCCAGTCCAGGCGGTGGCAGCCATGAGAGCGGTGAGCATAGCCCTCGCTCTAATGTCCGCGAGCAGGACAGGTTCCTTCCCATCGCTAACATCAGCCGAATTATGAAAAAGGCGCTTCCTGCTAACGGAAAAATAGCCAAGGACGCCAAGGAGACTGTGCAGGAATGTGTTTCAGAGTTCATCAGCTTTATCACCAGCGAGGCGAGTGACAAGTGTCAGAGAGAGAAGAGGAAGACTATTAATGGTGATGATTTGCTTTGGGCGATGGCAACTCTAGGTTTTGAGGATTATATTGATCCCCTGAAAATTTACCTAGCCAGATACAGAGAGGGTGATACCAAGAGTTCTGCAAAGGGTGGAGATTCAGCGGCCAAGAAAGATGTTCAACCTAGTCCTAGTGCTCAGCTTACCCATCAAGGTTCTTTTCCCCAAGGTGTTAACTACGCAAATTCTCAGGCTCAACATATGATGGTTCCTACGCGGGGACGGAATACTAAAAACGTAGCACGTTCCATTTCCATAAACAAACCTGCAAACCATCACATCTCTTATCCGCTGCTCTTAGTGTTGGCAATCCCTCCCTCCCTTCTATTCCCCCTCTTTCGTGCTTTCCCAGATGAAGCAGTCATGAATGCTGCCCTGCTCCCACCTTCACTGTCATCCATCTTCTTTTCTTCTTCTTCTACTGTCTCTAACCCATACCCTCTTCACTGCGTCTCTCCTCCTTTCAATCTCGCCGCCTCCGCCTCCAGGCCCGCTCGCTCCTTTCTCGTTGGCGCCACTGCCAACTACGCTGATCCATCAGACCTGTCTCTGGTTTCCGCCACCTCTGACCCGACTGTCGAAGCCCTAGATCAGAAACTGCTAACGCTCCTCCGCCAAAGGAAAACAGAAGAGGCCTGGATTGCCTACGCCAACAGCGCCCACCTTCCTAGCCCCACTTGCCTCAGCCGCCTTGTTTCTCAATTATCCTTCCAAAATACCCGCTCTGGTCTCACGCGCGCCCAGTCCATTGTCACGCGCCTGCGTCATGAGCGACAGCTCCACCGCTTGGATGCGAATTGCCTCGGCCTACTGGCCGTGGCCGCTATTAAGGCCGGCTACACGTCCTACGCCACGTCAATCGTCAAGTCCATGCTTCGCTCTGGCTATCTTCCCCACGTGAAGGCCTGGAGTGCCGTCGTCAGTGGCCTTGCTTCTTCCGGCGACGACGGTCCGGTCGAAGCTCTCAGGTTGTTCAAGGCGGTCATTCGGCGTGTACGAAAGTTCAATGATCTTCAAATAGTTTCAAACTCGCGGCCTGATACGGTTGCATTTAATGCCGGGTTAAATGCTTGTGCGAACTTGGGTGATAGTGAGATGTTCTTGCAAGTGTTTGATGAAATGCCCCAATACGGTATTGAACCCGATGCCTTGACTTACAATGTCATGATAAAGCTATGTTGTAAAACTGATAGAAAATACCTGCTTGTGTTTGTGTTGGAGAGGATCATAGAAGTGGGAATTCCTATATGCATGACTACTTTGCATTCATTAGTCGCAGCTTATGTTGGTTTTGGTGACATGAAGACAGCAGAGAAGTTGGTTCAAGCAATGAGGGAACAAAGAACGGATCTTTGCAAGATGCTAAGGGAGTCCAATTCAGAAGATTTGGTTGAAAATGATGAATCCGTTTTCAAGAAGTTGCTTCCAAATTTGACAAACCAGAGCGACAATGAACCACCATTGCTGCCAAAAGTATATGCCCCCAACTCTAGAATTTACACCACTCTAATGAAAGGCTACATGCAGGCAGGTCGTGTGAGTGATACAGTGAGAATGCTTGAGGCAATGCGCCGTCAGGATGATCGTTCCAGTCATCCCGATCATGTATCATACACCACTGTGGTTTCAGCACTTGTGAAGGCAGGTTCAATGGACAGGGCTTGTCAAATCCTTGCTGAAATGACGAGAATTGGCGTGCCTCCAAATCTGATTACCTACAATATCCTGCTTAAGGGTTATTGCATGCAGCTGCAGATAGATCAGGCAAGAAAGCTACTTAAGGAGATGGTTGATGATGCAGGGATACAGCCTGATGTGGTTTCCTACAACATTCTGATTGATGGATGTATATTAGTTGACGACAGTGCTGGGGCTCTTGCCTTCTTCAATGAGATGAGAGCAAAAGGAATAGCTCCCACTAAGGTTAGTTATACAACTTTGATGAAAGCTTTTGCTTTGTCAGGTCAACCAAAGCTGGCTCACAGGGTTTTTGATGAGATGCTCAATGATCATCGGGTTAAGGCCGATAGAATCGCCTGGAATATGTTGGTGGAAGGGTATTGCAGGTTAGGGTTGATTGAAGAAGCAAAGAAAATAATCGAAAAGATGAAGGATAATGGATTGTATCCTGATGTGGCCACTTACTGTAGTCTTGCAAATGGAATAGCGTTAGCGAGAAGACCAGGAGAGGCACTTCTACTTTGGAATGAAGTGAAGGAGAGGTGTAGGGTTGAGAAGGAAGAAGGCAAATCTGATTCATCTATTGCGCCACCACTCAAACCAGATGAAGGACTTTTAGATACTTTGGCTGATATCTGTGTGAGGGCTGCATTCTTTAGGAAGGCCTTGGAAATCGTGGCTTGCATGGAAGAATATGGGATACCTCCCAACAAGACCAAGTTTACTAGAATCTATGTGGAAATGCATTCCAGAATGTTCACAAGTAAGCATGCTTCAAAGGCAAGACAAGACAGAAGGATTGAGAGGAAAAGAGCAGCTGAGGCTTTCAAGTTTTGGTTGGGATTGCCTAATTCTTATTATGGAAGTGAGTGGCGTTTGGAACCTATTGATGGATATGATTCTGATTCGGTTTAG 2874 0.4743 MAEAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLARYREGDTKSSAKGGDSAAKKDVQPSPSAQLTHQGSFPQGVNYANSQAQHMMVPTRGRNTKNVARSISINKPANHHISYPLLLVLAIPPSLLFPLFRAFPDEAVMNAALLPPSLSSIFFSSSSTVSNPYPLHCVSPPFNLAASASRPARSFLVGATANYADPSDLSLVSATSDPTVEALDQKLLTLLRQRKTEEAWIAYANSAHLPSPTCLSRLVSQLSFQNTRSGLTRAQSIVTRLRHERQLHRLDANCLGLLAVAAIKAGYTSYATSIVKSMLRSGYLPHVKAWSAVVSGLASSGDDGPVEALRLFKAVIRRVRKFNDLQIVSNSRPDTVAFNAGLNACANLGDSEMFLQVFDEMPQYGIEPDALTYNVMIKLCCKTDRKYLLVFVLERIIEVGIPICMTTLHSLVAAYVGFGDMKTAEKLVQAMREQRTDLCKMLRESNSEDLVENDESVFKKLLPNLTNQSDNEPPLLPKVYAPNSRIYTTLMKGYMQAGRVSDTVRMLEAMRRQDDRSSHPDHVSYTTVVSALVKAGSMDRACQILAEMTRIGVPPNLITYNILLKGYCMQLQIDQARKLLKEMVDDAGIQPDVVSYNILIDGCILVDDSAGALAFFNEMRAKGIAPTKVSYTTLMKAFALSGQPKLAHRVFDEMLNDHRVKADRIAWNMLVEGYCRLGLIEEAKKIIEKMKDNGLYPDVATYCSLANGIALARRPGEALLLWNEVKERCRVEKEEGKSDSSIAPPLKPDEGLLDTLADICVRAAFFRKALEIVACMEEYGIPPNKTKFTRIYVEMHSRMFTSKHASKARQDRRIERKRAAEAFKFWLGLPNSYYGSEWRLEPIDGYDSDSV 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0604 957 Pfam PPR repeat 625 655 IPR002885 -
Lele15g0604 957 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Lele15g0604 957 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Lele15g0604 957 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Lele15g0604 957 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 627 661 IPR002885 -
Lele15g0604 957 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 623 IPR002885 -
Lele15g0604 957 Pfam PPR repeat family 769 815 IPR002885 -
Lele15g0604 957 Pfam PPR repeat family 439 488 IPR002885 -
Lele15g0604 957 Pfam PPR repeat family 662 709 IPR002885 -
Lele15g0604 957 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 733 767 IPR002885 -
Lele15g0604 957 MobiDBLite consensus disorder prediction 1 27 - -
Lele15g0604 957 FunFam Nuclear transcription factor Y subunit B-3 19 142 - -
Lele15g0604 957 Gene3D Histone, subunit A 17 157 IPR009072 GO:0046982
Lele15g0604 957 PANTHER BNAC05G43320D PROTEIN 226 936 - -
Lele15g0604 957 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Lele15g0604 957 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 698 732 IPR002885 -
Lele15g0604 957 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele15g0604 957 Gene3D Tetratricopeptide repeat domain 784 938 IPR011990 GO:0005515
Lele15g0604 957 MobiDBLite consensus disorder prediction 133 149 - -
Lele15g0604 957 Gene3D Tetratricopeptide repeat domain 331 493 IPR011990 GO:0005515
Lele15g0604 957 Gene3D Tetratricopeptide repeat domain 538 676 IPR011990 GO:0005515
Lele15g0604 957 Gene3D Tetratricopeptide repeat domain 677 770 IPR011990 GO:0005515
Lele15g0604 957 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Lele15g0604 957 TIGRFAM PPR: pentatricopeptide repeat domain 772 805 IPR002885 -
Lele15g0604 957 TIGRFAM PPR: pentatricopeptide repeat domain 664 699 IPR002885 -
Lele15g0604 957 TIGRFAM PPR: pentatricopeptide repeat domain 735 763 IPR002885 -
Lele15g0604 957 TIGRFAM PPR: pentatricopeptide repeat domain 629 662 IPR002885 -
Lele15g0604 957 TIGRFAM PPR: pentatricopeptide repeat domain 592 619 IPR002885 -
Lele15g0604 957 TIGRFAM PPR: pentatricopeptide repeat domain 700 733 IPR002885 -
Lele15g0604 957 TIGRFAM PPR: pentatricopeptide repeat domain 444 476 IPR002885 -
Lele15g0604 957 MobiDBLite consensus disorder prediction 118 149 - -
Lele15g0604 957 Pfam PPR repeat 592 618 IPR002885 -
Lele15g0604 957 Pfam PPR repeat 735 762 IPR002885 -
Lele15g0604 957 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 662 697 IPR002885 -
Lele15g0604 957 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 769 803 IPR002885 -
Lele15g0604 957 SUPERFAMILY Histone-fold 27 126 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0604 Lele-ChrLele15 3545645 3551413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele15g0604 1 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.271 1.14e-76 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele15g0604 CBFD_NFYB_HMF 1.2e-26 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1804 13 26187461 26189683 Lele15g0604 15 3545645 3551413 hybridization
Lele14g1749 14 24576990 24580153 Lele15g0604 15 3545645 3551413 hybridization