Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0600 ATGAACTCCAGCACCTCGAATTTTCAATCAATGGCGACTTCGACGCCCACTGATGGGTCTAGCAAGAAGGTGAGAAAGCCCTATACTATAACCAAGTCGAGGGAAAGCTGGACCGAGGAAGAGCACGACAAGTTTCTAGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAAGACTTTGTTGGTTCAAAAACGGTTATTCAGATTCGAAGCCATGCTCAGAAATACTTCTTAAAAGTTCAGAAGAATGGGACAATTGCACACGTGCCTCCTCCACGACCTAAGCGCAAAGCTGCTCATCCATACCCACAAAAGGCACCAAAGAATGTTTTGGTTCCATTACCAGCATCCATGGCTTACGTTTCTTCAACAAATACTATTGCACCTGGGTATGCCACATGGGATGAAACTTCAATACCGATTAATGCTGGATCAAACAGATACATACCATGTCAGGATGAAATCACCACCCTTCATGGGAATGAAGCTGATATTGGATCAAAGGGGATATCAAGGATTAGCAACAGTAGTCTCAGCGGTGTTGGGACCTCTACTAGAATGCTACAAGGTTCTGAGATGCCAAAGCAGGGGAAAAAAGGTCCAGTGCTTCATGGTTTACCAGACTTTGCTGAGGTTTACGGCTTTATTGGAAGTGTATTTGATCCAGATACAAAAGGACATGTCCAGAAGCTAAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTGATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTGGATCCTTTTGAGAAGCTGATTATTAGGAGGTCCAATTTGCATGGGACGATGCCATTTGCTCAGCCTCCAGCAAGGCAGGGAAGGGTCTTGGGCTCTTGGCTTCGCTGTGAACTAAAACCTGTAAATGTGACAATATGCCTTAGTAACCCCAGCCATGAGAATACATAA 948 0.4357 MNSSTSNFQSMATSTPTDGSSKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPPRPKRKAAHPYPQKAPKNVLVPLPASMAYVSSTNTIAPGYATWDETSIPINAGSNRYIPCQDEITTLHGNEADIGSKGISRISNSSLSGVGTSTRMLQGSEMPKQGKKGPVLHGLPDFAEVYGFIGSVFDPDTKGHVQKLKEMDPINFETVLLLMRNLTVNLSSPDLDPFEKLIIRRSNLHGTMPFAQPPARQGRVLGSWLRCELKPVNVTICLSNPSHENT 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0600 315 CDD SANT 36 79 IPR001005 -
Lele15g0600 315 SMART sant 33 81 IPR001005 -
Lele15g0600 315 Pfam Myb-like DNA-binding domain 34 79 IPR001005 -
Lele15g0600 315 MobiDBLite consensus disorder prediction 1 33 - -
Lele15g0600 315 FunFam protein REVEILLE 6 isoform X1 36 84 - -
Lele15g0600 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 81 IPR006447 GO:0003677
Lele15g0600 315 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Lele15g0600 315 PANTHER SWI/SNF COMPLEX-RELATED 11 256 - -
Lele15g0600 315 ProSiteProfiles Myb-like domain profile. 29 79 IPR001005 -
Lele15g0600 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 83 IPR017930 -
Lele15g0600 315 Gene3D - 37 84 - -
Lele15g0600 315 ProSiteProfiles SANT domain profile. 32 85 IPR017884 -
Lele15g0600 315 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0600 Lele-ChrLele15 3530287 3534729 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele15g0600 Myb_DNA-binding 4.7e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1808 13 26201918 26206114 Lele15g0600 15 3530287 3534729 hybridization
Lele14g1751 14 24592025 24598357 Lele15g0600 15 3530287 3534729 hybridization